| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_1848 |
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| Symbol | |
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| ID | 4671302 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax sp. JS42 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008782 |
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| Strand | + |
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| Start bp | 1929468 |
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| End bp | 1931084 |
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| Gene Length | 1617 bp |
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| Protein Length | 538 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 639838935 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_986110 |
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| Protein GI | 121594214 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR00999] Membrane Fusion Protein cluster 2 (function with RND porters)
[TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.485461 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCATGA ACACGAACTC CAGCAAATCC ACCATCAGTA AAAAACACCT GATCGCCATT
GCAGTAGTCC TCGCACTAGG GGTCGGCGCG GGAACCTTCA TCTTGCAAGG TGGCGGCAAG
CCCAAGGCTG CGACCGCCGA GGGCGATGGC CACGGGCATG GCAGCCATAC TGAAGCGAAG
GGACACGGCG ACGGTGAACA CCATGGCAAG GGTGGCGAAA AGGGCCACGA CGATGACAAG
GGGCATGCCG ATGGTGAACA CCATGAAAAG AGCGAAGCCA AGGGACCACA TGGCGGTACC
GTGTTCAAGG AAGGCGACTT CAGCTTGGAA GCATTGTTGT CTGAAGACGG TGGCGAGCCT
CGACTGCGAA TCTGGCTGTC CGACAAAGAT AAACCGCTGC CCCTGAATGC TGCAACGGTC
ACGGCAACTG TGACCCGCCC GACAGATGAA AAGCAGAAAC TGACGTTTGC CGCTGAAAAA
GACAGTCTTG TCAGCCGGGA GATCGTTGCT GAACCCCATG CGTTCGACAT AGAGATCATT
GCGCAGACTG CCACAGAGCC TTTCATGTTC GTGATGAGCA AGGAAGAAGG AAAGATCGAA
CTGACCGATG CCCAGATAAA GGCTGCATCC ATCAGCCTGG ACAATGCGGT CAAAGCCAAC
ATCAAGACGG CCTTGCTTCT TCCCGGCGAG ATACGCTTGA ACGAAGACCG CACGTCTCAC
GTTGTTCCCC GGCTTGCGGG AGTCGTGGAA AGCGTCAATG CCAGCTTGGG CCAAGTGGTC
AAGAAAGGGC AAGTTTTGGC GGTGATCGCG AGCCCGACTG CTTCCGAGCA ACGCAGCGAG
CTGCAGACGG CCCAAAAGCG CTTAACGCTG GCAAAGACCA CCTACGAGCG AGAAAAAAAG
CTGTGGGAGC AGAAGGTGTC TGCCGAGCAG GACTACCTGC AGGCCAAGCA GGCCTTGAGC
GAAGCAGAGG TCGCAGTAGC CAACGCCAAT CAGAAACTGA GCGCGATGGG CCTGTCCGCC
TCGTCGGTAG CAGGACTGAA CCGTATCGAG TTGCGAGCGC CCTTTGATGG CATTGTCATC
GAGAAGCACC TTAGTTTCGG CGAAGCCGTG AAGGAAGATG CTGCGGTTTT CACCATCTCG
GACCTTTCCC AGGTGTGGGC CGAGATCAAT GTTCCGGCAA AAGACTTACC AGCGGTGCGT
GTGGGTGAAA AGGTCACGAT CAAGGCCACC GCCTTTGACG CCTCCGCTAC AGGCACTGTC
GCTTTTGTAG GAGCGCTCAT TGGCGAGCAA ACCCGCACGG CAAAAGCCCG CGTGGTTCTT
GACAACCCCA AGGGCGCTTG GCGCCCCGGC CTGTTTGTCA ATGTTGAGGT GGTGTCCGAA
GAAACGGTAG CGCCTGTAAC CATCTCGGCC GACGCTGTCC AAAACGTCGG GGAAAAGCCG
GTGGTCTTCC TCAAGGTTGA TGGAGGCTTT ATCGCTCAAC CCGTGAAGCT GGGCCGAAGC
GATGGCAAGC GGGTCGAAGT CCTCTCGGGT CTCAAAGCCG GTATGCCCTA CGCCTCGACC
GGCAGCTTCG TCGTGAAGTC TGAACTCGGC AAGGGATCTG CCGAACACAC GCACTGA
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| Protein sequence | MTMNTNSSKS TISKKHLIAI AVVLALGVGA GTFILQGGGK PKAATAEGDG HGHGSHTEAK
GHGDGEHHGK GGEKGHDDDK GHADGEHHEK SEAKGPHGGT VFKEGDFSLE ALLSEDGGEP
RLRIWLSDKD KPLPLNAATV TATVTRPTDE KQKLTFAAEK DSLVSREIVA EPHAFDIEII
AQTATEPFMF VMSKEEGKIE LTDAQIKAAS ISLDNAVKAN IKTALLLPGE IRLNEDRTSH
VVPRLAGVVE SVNASLGQVV KKGQVLAVIA SPTASEQRSE LQTAQKRLTL AKTTYEREKK
LWEQKVSAEQ DYLQAKQALS EAEVAVANAN QKLSAMGLSA SSVAGLNRIE LRAPFDGIVI
EKHLSFGEAV KEDAAVFTIS DLSQVWAEIN VPAKDLPAVR VGEKVTIKAT AFDASATGTV
AFVGALIGEQ TRTAKARVVL DNPKGAWRPG LFVNVEVVSE ETVAPVTISA DAVQNVGEKP
VVFLKVDGGF IAQPVKLGRS DGKRVEVLSG LKAGMPYAST GSFVVKSELG KGSAEHTH
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