| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Afer_2029 |
|---|
| Symbol | |
|---|
| ID | 8324132 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidimicrobium ferrooxidans DSM 10331 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013124 |
|---|
| Strand | - |
|---|
| Start bp | 2146066 |
|---|
| End bp | 2149758 |
|---|
| Gene Length | 3693 bp |
|---|
| Protein Length | 1230 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644953156 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_003110603 |
|---|
| Protein GI | 256372779 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCAAGG GCGGGGAGCG GTCCCGTCCG ATCGCGACGT CGGTGACCGA AGGCTCGTGG
GCAGCGGTTG CGCCATGGCT TCGCCGGCAC CGTGGCAAGC TTGCCGTGAC CCTGCTTGCA
TCGGCCGTGT CGATGGGGTC GCTGGCGTTG GTTCCCGTGG TGCAACGAGC CGTGATCGAC
GGGCTTGGAG GCCGACGGGC CGCCATCGAG GCGCTGGTGC TCGGCTTAGT GGGGATCGGT
ATCGTGCGTT TTGGCACGAC CCTGGTGCGA CGGTTCATCG GTGGCCGAGT GGCCTACGAC
GTGCAACTCG ACATCCGGAA CGAGGTGTAC GCGCACCTCG TCTCGCTCGA TCTCGCCACC
CACGAAGGTC TCGAGATCGG CCAGCTGCTC TCACGTGTGA CGACGGATCT CGGTCTCGTT
CAACAAGTCC TGGCGTGGGC TCCGATGGTT CTTGGCGCGG TTCTCCAAGC GATCGTGTCG
ATCGTCATCA TGAGCGTGCT GAACGTCTGG CTCATGCTGC TCGCACTGAT CGTCCCGGTT
GCCACCTTCC TAGCGTCGCG AACCCTGCGC TCCACGGTCT TCCCGTCGAG CTGGGACGCA
CAGCAGCGGG AGGGCGAACT CACGACCGTG GTGACCGAGT CGATCATCGG AGCTCGTGTG
GTGCGCGCCT TCGGGCAGGA AGCGTCGCAG ATACGCCGGT TCGTCGATGG CGCGCGTGCG
CTCTACGCGT CGAGGCTTCG CAACATCAGG CTGCGCGCCT GGGTCACCGC TGAGCTCCAG
GCGATACCGC AGCTCGTGCA GGCAGGCATT CTCGCCCTCG GCGGTCTGCT TGCGTTGAAC
GGCGACGTCA CGATCGGGAC GTTCGTCGCC TTCGCGAGCT ACCTGACGCA GCTCGCGGCG
CCCGCGCGCA TGGTGGCCGG CATCCTCGTC GTCGGCCAGC AGGCGCGAGC AGGCTTCGAA
CGGATTGACC AACTCCTCTC GATCGAACCT GGCATCACCG AGGTGCCGCA CCCACTGCCA
CTTCCACGCG ACGCTCGCCG TGTCAGCGTA CGGGGCGTCA CGGCGCTACG TGGGGGGACG
CACGAAGTGC TCGCAGGGGT CGATCTCGAG ATCGCGGCTG GTGAGATGGT CGCGATCCTC
GGCCCGTCGG GATCCGGGAA GACCACGCTC TGCACGTTGT TGCCGCGGTT GGCCGAGGTC
TCGGGGGGCG CGGTGCTCGT TGGCGGCGTC GACGTCCGCT CGGTGTCGCT CGCCGAGCTA
CGGCGCCGCG TGAGCATGGT CTTCGAGGAG AGCGTCCTGC TGGCCGGCAC GGTGGTCGAC
AACGTTCGTT TCGGTTGCCC GGATGCGTCG GAGGCCGAGG TTCGTGAGGC CTGTGGACGG
GCGGGCGCCC TGGAGTTCAT CGAGGCCTTG CCTGACGGGT TCGACACCCA GATCGGCGAA
GGCGGAGTGA CACTCTCAGG AGGTCAGCGC CAACGCCTCG CGCTTGCGCG TGCACTCGTC
ATGCGCCCGC ACGTGCTCGT GCTCGACGAC GCGACCTCGG CCATCGATCC GACGACCGAG
GAGCGCATCA TCGCGTCGAT CCGGGCGCTG CCAGAGCGCC CGACGGTGAT CGTCGTGTCG
CACCGTGCCT CTGTCGTCTC CTTGGTCGAT CGTGTGGTGG TGTTGGAGCA GGGCTGTGTC
GTCGCTGACG GTTCGGTTGC CCGTGTCGCC GCGATGTCGT CGTGGGTGCG CCGATTTCTC
GATGGTGGGG ATGGCTCTGA TGTCGAGATC GAGGCGGTGT CCCCCAAGCG ACAGATCGTC
GAGGCGAGTG GTTCTGGTCG GCGTCGCCTC GCAGCTGCTC GGAGCCTGGG TGACGTGCCG
CCTTGGGTCG GCGAGCTCAT CGCGCACCTC CCCCCGACTC GTGATGAGCC GCAGCGGCCC
CGGTGGACAC AGCCACCTGG CGAGGGTCGC ATCCGACTCG GCACGTTTCT CTCCGGCTGG
CGCTTCGGCC TCGTGCTCGC GTTGGCACTC GTCGCCATCG ACACCGCTTC GGGGGTCATC
GGCCCCCTCA TCGTGCGAAG TGGTATCGAC GGAGGCATGC TCGCCCACAG TGGCATCACG
GTTGTGCTCG CCGCGCTCGG ACTCCTCGCG GTCGCGTTGA TCGGTTGGAT CGATCAGTGG
GCCGAGACTG TCCAGACGGG CCGTGTGGGG GAGTCGATGC TCTTCGAGCT GCGGCTCCGA
CTGTTCTCGC ACCTACAGCG GCTCGGTATC GACGTCTTCG AACGGGAGCC GAGCGGTCGG
CTCGTCACCC GGCTGACCAG CGACGTCGAG ACCATGTCGC AGCTGCTCCA GAACGGCTTG
GTCAGTGCCA TCGTGGGGAT CGCGACGGTC GTGGTGATTG CGGTCGTGCT CGTCGCACTC
GAGCCGCGTC TCGCGTTGGT CGCACTGGTC GCCGTGCCGG TGCTCGTGGT CGCGACCGTG
GTGTATCGAG CCATCGCTCA GCGCGCCTAC GACCGGCAGC GCGAACACGT GGCCGCGGTG
AACGCGCATT TCCAAGAGAG CATCGCTGGC GTGCAAGTCG TCCAGGCCCT CGGTCAGGAG
GAGGCTGGTC TCGCGACGTT TCGACGGCTG GGGATTGCCT ATCGCAACGC CAGCTTGACC
GCTCTTGGTG TCCAGGCGAT CTACGTGGCC CTCGCGGACC TTACCAGTGT GGTGGTGACC
GCCGGTGTCC TCTGGGTGGG GAGTGGGCTG GTGCGTGGCC ATGTGATCGA AGTCGGCGTG
CTGGTCGCGT TCTTGCTCTA CATCACGCAG CTGTTCGCGC CCGTCCAACA GCTCGCACAA
ACCTTCGACG CGTACCAGCG AGCGAGGGCC GGACTGCGCA AGATCAACTC GCTCCTCGAC
GAGCAACCGA GCATCCGCTC CAGCCCGAAC GCGAGTCGAC CCACCCGGAT CCGAGGGAGC
ATCGAACTCG ATCGGGTGTG GTTCGCCTAC CCGGGGGTTC AGCGCCCCGC GCTTCGTGAC
TGCTCGCTCG CGATCCCAGC GGGCCAGCAC GTCGCGGTGG TGGGTGAGAC AGGCGCCGGT
AAGTCGACCC TCATGAAGCT GCTGGTTCGC TTCGTCGATC CCTCGCAAGG CGCGGTGCGC
CTCGACGGCA CGGATCTGCG AGCCTTGGAC CTTGCGTGGT TCCGCAGCCG GGTCGGCTAC
GTCCCCCAGG AGCCGTTCCT CTTCTCAGGC ACGATTCGGG ACAACATCAC GTTCGGTGCA
CCCTGGGCCA GCGACGACGA CGTCGAGGCC GCAGCGCGAG CCGTCGGTGC CCATGACGTC
ATCGCTGCAC TGCCGGACGG CTACGACCAG GTCGTGGGCG AGCGTGGTCG CGCGCTGGCG
GCGGGGGAGC GCCAACTCGT GTGTCTTGCG AGAGCCGTCC TCATCGATCC CGCGATCTTG
CTCCTCGATG AAGCGACGTC GAACCTCGAT CCCGAGCTCG ACGCTCGCGT GCACGCTGGC
ATCGAGCGTG CCGGCGCCGG CCGCACGACG GTCATGATCG CGCATCGCCT CCACAGTGCC
GAGCGCATGG ATCGGATCGT CGTCGTGGGT GCCGGAAGCA TCCTGGAGGA CGGCACCCAC
GACGAACTGC TTCGACGGGG CGGATGGTAT GCACAGGCGC AGCGAGCTAC CGCGGCCATG
GCTGAGCTTC ATCGTCGAGC GGTCGGAGAG TGA
|
|---|
| Protein sequence | MTKGGERSRP IATSVTEGSW AAVAPWLRRH RGKLAVTLLA SAVSMGSLAL VPVVQRAVID
GLGGRRAAIE ALVLGLVGIG IVRFGTTLVR RFIGGRVAYD VQLDIRNEVY AHLVSLDLAT
HEGLEIGQLL SRVTTDLGLV QQVLAWAPMV LGAVLQAIVS IVIMSVLNVW LMLLALIVPV
ATFLASRTLR STVFPSSWDA QQREGELTTV VTESIIGARV VRAFGQEASQ IRRFVDGARA
LYASRLRNIR LRAWVTAELQ AIPQLVQAGI LALGGLLALN GDVTIGTFVA FASYLTQLAA
PARMVAGILV VGQQARAGFE RIDQLLSIEP GITEVPHPLP LPRDARRVSV RGVTALRGGT
HEVLAGVDLE IAAGEMVAIL GPSGSGKTTL CTLLPRLAEV SGGAVLVGGV DVRSVSLAEL
RRRVSMVFEE SVLLAGTVVD NVRFGCPDAS EAEVREACGR AGALEFIEAL PDGFDTQIGE
GGVTLSGGQR QRLALARALV MRPHVLVLDD ATSAIDPTTE ERIIASIRAL PERPTVIVVS
HRASVVSLVD RVVVLEQGCV VADGSVARVA AMSSWVRRFL DGGDGSDVEI EAVSPKRQIV
EASGSGRRRL AAARSLGDVP PWVGELIAHL PPTRDEPQRP RWTQPPGEGR IRLGTFLSGW
RFGLVLALAL VAIDTASGVI GPLIVRSGID GGMLAHSGIT VVLAALGLLA VALIGWIDQW
AETVQTGRVG ESMLFELRLR LFSHLQRLGI DVFEREPSGR LVTRLTSDVE TMSQLLQNGL
VSAIVGIATV VVIAVVLVAL EPRLALVALV AVPVLVVATV VYRAIAQRAY DRQREHVAAV
NAHFQESIAG VQVVQALGQE EAGLATFRRL GIAYRNASLT ALGVQAIYVA LADLTSVVVT
AGVLWVGSGL VRGHVIEVGV LVAFLLYITQ LFAPVQQLAQ TFDAYQRARA GLRKINSLLD
EQPSIRSSPN ASRPTRIRGS IELDRVWFAY PGVQRPALRD CSLAIPAGQH VAVVGETGAG
KSTLMKLLVR FVDPSQGAVR LDGTDLRALD LAWFRSRVGY VPQEPFLFSG TIRDNITFGA
PWASDDDVEA AARAVGAHDV IAALPDGYDQ VVGERGRALA AGERQLVCLA RAVLIDPAIL
LLDEATSNLD PELDARVHAG IERAGAGRTT VMIAHRLHSA ERMDRIVVVG AGSILEDGTH
DELLRRGGWY AQAQRATAAM AELHRRAVGE
|
|---|
| |