Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Afer_0170 |
Symbol | |
ID | 8322223 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidimicrobium ferrooxidans DSM 10331 |
Kingdom | Bacteria |
Replicon accession | NC_013124 |
Strand | + |
Start bp | 177964 |
End bp | 179799 |
Gene Length | 1836 bp |
Protein Length | 611 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 644951317 |
Product | Xylan 1,4-beta-xylosidase |
Protein accession | YP_003108812 |
Protein GI | 256370988 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3664] Beta-xylosidase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.268815 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGAAAGCCC ACGGAGAGCA GCAGGACGCG ACCCGGGCGG TACTCGAGCG CTGGGAGGAG GGAACTCGTG AGCGACGTGT CGACGAGCAC GTTGGTCACC TTCCTCCCCC GACGGGCGTC GAGGCCTGGC GTGGCTCGGG CTGCGTCACC ATCACATGGC AGCGTGTCGA GGGTGCGGTG TGCTATCTCG TCGAGCGGGC GCCGAGTCCG GACGGTCCGT GGACGGTGCT TCGGCGCGCC GAGCACGACC TCGTCGAAGT CGCTGGGCCT CCAACGCTGG ACACGAGCCG GGAGGCGGGC GGTTGGTACC GGGTGGCGGC ACTCGAAGAT GTGGGTCGTC GTCCGACGTC GTTCTCCGAT CCGGTCGAGG CGCGCGATGG CGACCGCAGC GCAGCGGTGA CGGTACGGGT CGAGGCGTCG TCCCCGGTCG GCTCACTCGC GCCCGTGTGG TGGATGGTGG GCTCCGAGCG GCCAGGGCAG CTGCTCCTTC GCGACGACGG CTTCGGTCAT GACGTTCGGG CCGAGGTGCT CGAGGCCTAT CGCCGGGCCG CGGCGATCGG CGTGACGCAC GTTCGGGCGC ACTGCTGGCT CGATGACGCC TTTGGGATGG TGGACGCGTC TGGTCGCCTG ACCGAGACGA GCGCGCTCGA CGAGGTGCTC GATCTCGTGC TCGCCAGTGG TCTTCGCCCG ATCGTGGAGC TGTCCTTTAC GCCATCATCC CTGGCCACGG ATCCAGCGGC AACCGTGTTC ACCTATCGGG CCAACGTGTC GCCTCCCGCT GACCTCGTTC GCTACGGCGA ACTCGTGGCG CAGGTGGTGC GCCACATGAT CGAGCGCTAC GGCGCCGACG AAGTCCGCGA GTGGGCGTTC GAGGTGTGGA ACGAGCCCAA CTTGGCCGTC TTCTGGACCG GCGACATGGC TGCCTACTTC GCACTGTACG ACCGGGTCGC GAGGGCGGTG AAGGAGGTGG ATCCGGCGCT ACGTGTGGGA GGCCCCGCAA CCGCGGGAAG CGGGTGGATC GCGCCGTTCC TCGACTTCGT CCACGAGACC GATGCGCCGT TGGACTTCCT GTCGACGCAC ACCTATGGCG GTATGCCTCT CGACCTGCGT GCCCAGCTTG CGCGCGTCGG TCGGGGGGAC GTCCCCGTGT GGTGGACCGA GTGGGGCGTG TCGCCGACGC ACCACGCGCG GGTCAACGAC GGGGCCTTTG GTGCGCCCTT CGTGGTGCGC GGCATGAAGG CAGCACAGCA GATCGCAGCT GCCCTCTCGT ATTGGGTGGT GAGCGACCAC TTCGAGGAGC TCGGCAGGCC GGAACGCCTC GCCGCGGGAG GTTTCGGGCT GTTGACGGTC GGCAACCTTC CGAAGTCGCG CTGGCACGCG CTCAGTCTCG TCGCTGAGCT GCCTTCTCGA ATCGTGGCGA CCGAGGTGGA GGGCGACGGT GCTGGAGCAC TCGTGGACGG GTGGGCGGGT GCCGATGCGG AGCGGGTCGA CGTTCTCGTG TGGAACGGCT CGCACGATGC GGCCGACGCC GAGGGTCGCG GTGACCTCGA TCGGACGGTG ACTGTGACGC TCGAAGGGCT CGAGGACGGC GAGTGGCTGC TCGAGCTCAC GCGCGTCGAT CGGGATCACG CTTCGTTCCT CGAGGCGATC GCGGGTGAGG ACCCATGGCC TGGGCCCGAG GCCACGGCGG CCCTCCGGGA GCGCGCGGCG CTGCGGGTCG AGCCGGCTGG CCGAACCTCC GTCGTCGACG GGGGGCGCAT CGAGATGACC GTGCGCGTGC CGATGCCCGG GTTGGTGCGG CTCAGGGCAC GCCGCGCGAG GAGTTGGGAG GCCTGA
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Protein sequence | MKAHGEQQDA TRAVLERWEE GTRERRVDEH VGHLPPPTGV EAWRGSGCVT ITWQRVEGAV CYLVERAPSP DGPWTVLRRA EHDLVEVAGP PTLDTSREAG GWYRVAALED VGRRPTSFSD PVEARDGDRS AAVTVRVEAS SPVGSLAPVW WMVGSERPGQ LLLRDDGFGH DVRAEVLEAY RRAAAIGVTH VRAHCWLDDA FGMVDASGRL TETSALDEVL DLVLASGLRP IVELSFTPSS LATDPAATVF TYRANVSPPA DLVRYGELVA QVVRHMIERY GADEVREWAF EVWNEPNLAV FWTGDMAAYF ALYDRVARAV KEVDPALRVG GPATAGSGWI APFLDFVHET DAPLDFLSTH TYGGMPLDLR AQLARVGRGD VPVWWTEWGV SPTHHARVND GAFGAPFVVR GMKAAQQIAA ALSYWVVSDH FEELGRPERL AAGGFGLLTV GNLPKSRWHA LSLVAELPSR IVATEVEGDG AGALVDGWAG ADAERVDVLV WNGSHDAADA EGRGDLDRTV TVTLEGLEDG EWLLELTRVD RDHASFLEAI AGEDPWPGPE ATAALRERAA LRVEPAGRTS VVDGGRIEMT VRVPMPGLVR LRARRARSWE A
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