Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Adeg_2072 |
Symbol | |
ID | 8492081 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ammonifex degensii KC4 |
Kingdom | Bacteria |
Replicon accession | NC_013385 |
Strand | - |
Start bp | 2065319 |
End bp | 2068690 |
Gene Length | 3372 bp |
Protein Length | 1123 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 646360062 |
Product | transcription-repair coupling factor |
Protein accession | YP_003240000 |
Protein GI | 260893903 |
COG category | [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAGTTCC TGCTGAAACT TTTTTGTGAG GCACCTTCGG TACAAAAAAT TAAGACCGCC CTGCAGGCAG GCAAGCCCCA GGCGGTCTAC GGGCTGAGCG GCACGGCTCT AAGTTTCCTT CTGGCCGCTA CCTTTCGCGA GTGGCCGGCA GGAATGGTGA TCGTGCCGGA CGAGGAAACG GCCCTGACCC TGGCGGCGGA GCTCAAGCTC CTGTGGGGGG AGGAGGTTTT TGTTTTCTTA CCTCGGGAGA TCTTTGGGTT GGGGCCTAGC CTTCCTTCTG CTTTTGTCCC CCGCCAGCGG CTCCTATCCC TGGCGGCACT TGCTCGCCGG CAGGGGGTAG TCGTGGCCAC CGCGCCGGCA CTCCTGCAGG GGCTGGCTCC GCCGGAAAAC TTTTCTCCCC ACTGCTGGGA GCTGTGGAAG GGAGAAGAGC TTTCCCCGGA GGAACTGGGG CAGAGGCTGG TCGAGACCGG TTACGTCCGC GTTTCAGCGG TAGAGGTTCC CGGGCAGTTT GCCCGGCGCG GGGGAATTGT GGACTTCTTT CCCCCTTCCT CCCCCCTTCC GGTCCGGGTG GAGTTTGACG GGGACGAGAT AGCCCGCATC GCTACTTTCG ACCCTGCTTC TCAGCGCTCG CAGACCCGGT TGGAAGCGGT TAAAGTAGAG CCGGCGGTCG AGGTCCCAAA TCCTTGTACC GGACGGGAAA TCCTTCCGGA GAGCTGGTTC TTGAGCCAGG GGGAAGATTC CTTCCCTTAT CCGGAGGTGC TCCTTCCCTG CCTCTTTCCC CGCGTGGTGT CTCTTCTGGC TTATCTTCCT CCTGGGGCGC CCTTAGCGCT GGTGGAGGCC CAGGCGGCGG AAAAGGCGGC CCGTGAGGCC GAAGAGCGGC AGATGGAGAT CTGCCGGGAG ATGATTGCCA AGAAAAAGCT GCCGGAGGAG AGCCGGAAAG CTTTTCTTTC TTGGTCTGAA GTGGCCAAGG AGCTAAGCCT TTATCCCCAC CGCCTGCGCC TTTCTTTTCT GCCGGAGAAG AACGGGGAAG TCCTGGGCCT GGCGGTGCGG ACTGCCCCCA GCTTCCTTGG CAAGTTTGCC CAGCTGGCGG AAGAAATACA GGAGTTCATG CGTCACTACC GTGTGATCCT GCTAGTGGAC AAGGAAGAAA GGGTCAAAGG AGTAGTGGAG GGGCTTAAAG AGTACGGTAT CATTCCCAGG CTGACGCCGG ACTCCGCCCC GGTAGGCACG GTGACGGTGG TGAAAGGGGG GAACTTGCGA GAGGGGTTTA TCTTCCCCGA GGCTCAATTC GTCCTCCTCA CTCCGGCAGA GATCTTCGGC CGACGCCAAG CTACCTTCTC GCCCACTCCG ACCCCGGTGG TGGAGGAAGA GCGGGAGTTC AAACCGGGGG AGTACGTAGT CCATCCGGAG CACGGGATAG GCATCTACCG GGGGCTGGTC CAGCTCTCCG TAGAAGGGGT AACACGGGAG TACGCCCTCA TCCAGTACGC CGGTGAAGAC AGGCTTTACC TTCCAGCCGA CCAACTGGGG GTGCTCGAGC GCTACGTAGG AGGGGAGGGG GCCAAGCCTC GTCTTTCCCG TCTGGGAGGG GGAGAGTGGA AGCGGGTTCG CGCCCGGGTC AAACAGGCGG CGACTGACGT GGCGCGGGAA CTCTTACGCC TTTACGCCAT GAGGGAGACG GCTAAAGGTC ACGCCTTCTC GCCCGATACA CCTTGGCAAA GGGAGTTTGA GGCCGCCTTT CCCTACGAGG AGACCCCGGA TCAACTCCGG GCCATTGCCG ACGTGAAGGC GGACATGGAA AAGCCCCGCC CTATGGATCG GCTCATCTGC GGGGACGTGG GCTTCGGCAA AACGGAGATA GCCTTGCGGG CGGCTTTCAA GGCGGTGATG GACGGCAAGC AGGTGGCGGT GTTGGTTCCC ACCACCATCC TGGCTCAGCA ACACTACCGG ACCTTCTCCA GCCGCTTTGC TCCTTACCCG ATAAGAGTAG CCTGGCTCTG CCGCTTCCAG ACCCCGGCGG AGCAGCGGGA GGTGATAAAG GGGCTTAAGG CGGGCACTAT CGACATTGTC ATCGGCACCC ACCGGCTTTT GCAGAACGAC GTGCAGTTTC GCGACCTGGG CCTGGTGATC ATCGACGAAG AACAACGCTT CGGCGTCCTG CAAAAGGAGA AGCTCAAGCT TCTGCGGAAG GAAGTGGATG TACTCACCCT GACGGCCACC CCCATTCCCC GCACCCTTTA CATGTCTCTG GTCGGCTTGC GGGACACCAG CTGTCTTACC ACCCCTCCTC CCGACCGGCT GCCGGTGGAG ACCTACGTGG TGGAGGAGGA CCCGGCCATC ATCCGCGAGG CCATCAGGCG CGAGTTGGCC CGGGGTGGGC AGGTGTACTT CGTTTACAAC CGGGTGGCTG GCATCGTGGA GGTGGCCAAC TGGGTCAAGC ACCTGGTGCC GGAAGCCAGG GTGGCCTATG CGCACGGCCA GATGCCGGAA GCCGCCCTGG AGCGCATCAT GCTCGACTTC ATCGACCATA AGTACGATGT GCTGGTGGCT ACCACCATCG TGGAAAACGG GCTGGACATC GGCAACGTTA ACACCCTGAT CGTTAAAGAC GCCGACCAAC TAGGGCTTTC GCAGCTATAC CAGCTGCGGG GAAGGGTGGG TAGGACCAAC CGGCTGGCCT ACGCCTACTT CCTGTACCGC CGGGACAAAA TAATAAACGA AGCAGCCAAG GCACGGCTCC GGGCCATAAA GGACTTCACC TCCCTAGGGG CGGGGTTTAA AGTGGCCAAG CGCGACCTGG AGATCCGGGG TGCCGGGAAC CTCTTGGGCA CGGAGCAGCA CGGGCACATC CAGGCGGTGG GGCTGGAACT CTACTGCCGG CTGCTGCAGG AGGCCATAAA GGAGCTCAAG GGAGAAGAAG TGGTCCCGCC GGTGGACCCG GTGATCGAAC TCACGGTATC GGCCTACATC CCGGACGACT ACGTTCCCTT CGACCAGAAG CTGGAGATCT ACCAGGAGCT GAGCCGGGCC GAGACCCCGG AGGAGGTGGA GGGTCTGGCC GAGGGTTACC GCGATCGCTA CGGTCCTTTC CCGCCTCCCT TCCGCAACCT TCTGGCGGTG GCGCGGCTGC GGGCTCAGGC CAAAAGATTG CGGCTCAAGC TCATAGGACG CCAGGGCGGG TTTTACCGCT TGGTCTTTGC GCCTGGACAC CAACTTTCCC CCGCCAAGCT GGTTGCGGTA GCGGATAAGT GGGGGGCGCG CTTCAAGCAG GAGGGAGAAG ATTTCGTTAT CCTGCTCCCG GCTTCCGGGA GAGGGCCGGA GGGGGAGCCT GAACTCAAAA AATTGTCGCA ATTTCTTGTG GCCCTCCACT AA
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Protein sequence | MEFLLKLFCE APSVQKIKTA LQAGKPQAVY GLSGTALSFL LAATFREWPA GMVIVPDEET ALTLAAELKL LWGEEVFVFL PREIFGLGPS LPSAFVPRQR LLSLAALARR QGVVVATAPA LLQGLAPPEN FSPHCWELWK GEELSPEELG QRLVETGYVR VSAVEVPGQF ARRGGIVDFF PPSSPLPVRV EFDGDEIARI ATFDPASQRS QTRLEAVKVE PAVEVPNPCT GREILPESWF LSQGEDSFPY PEVLLPCLFP RVVSLLAYLP PGAPLALVEA QAAEKAAREA EERQMEICRE MIAKKKLPEE SRKAFLSWSE VAKELSLYPH RLRLSFLPEK NGEVLGLAVR TAPSFLGKFA QLAEEIQEFM RHYRVILLVD KEERVKGVVE GLKEYGIIPR LTPDSAPVGT VTVVKGGNLR EGFIFPEAQF VLLTPAEIFG RRQATFSPTP TPVVEEEREF KPGEYVVHPE HGIGIYRGLV QLSVEGVTRE YALIQYAGED RLYLPADQLG VLERYVGGEG AKPRLSRLGG GEWKRVRARV KQAATDVARE LLRLYAMRET AKGHAFSPDT PWQREFEAAF PYEETPDQLR AIADVKADME KPRPMDRLIC GDVGFGKTEI ALRAAFKAVM DGKQVAVLVP TTILAQQHYR TFSSRFAPYP IRVAWLCRFQ TPAEQREVIK GLKAGTIDIV IGTHRLLQND VQFRDLGLVI IDEEQRFGVL QKEKLKLLRK EVDVLTLTAT PIPRTLYMSL VGLRDTSCLT TPPPDRLPVE TYVVEEDPAI IREAIRRELA RGGQVYFVYN RVAGIVEVAN WVKHLVPEAR VAYAHGQMPE AALERIMLDF IDHKYDVLVA TTIVENGLDI GNVNTLIVKD ADQLGLSQLY QLRGRVGRTN RLAYAYFLYR RDKIINEAAK ARLRAIKDFT SLGAGFKVAK RDLEIRGAGN LLGTEQHGHI QAVGLELYCR LLQEAIKELK GEEVVPPVDP VIELTVSAYI PDDYVPFDQK LEIYQELSRA ETPEEVEGLA EGYRDRYGPF PPPFRNLLAV ARLRAQAKRL RLKLIGRQGG FYRLVFAPGH QLSPAKLVAV ADKWGARFKQ EGEDFVILLP ASGRGPEGEP ELKKLSQFLV ALH
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