| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acid345_4058 |
|---|
| Symbol | |
|---|
| ID | 4072480 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Koribacter versatilis Ellin345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008009 |
|---|
| Strand | + |
|---|
| Start bp | 4798974 |
|---|
| End bp | 4799849 |
|---|
| Gene Length | 876 bp |
|---|
| Protein Length | 291 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637986089 |
|---|
| Product | RpiR family transcriptional regulator |
|---|
| Protein accession | YP_593132 |
|---|
| Protein GI | 94971084 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1737] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.369796 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.143797 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAGCG CCGCGAAAGT TGTCGTCGTT CCCGACCATA CGTTGAGCTT CGCCGAACGC
ATGGAACGCC TGAGTAAAAA GCGCAGCGAA CTGATCCGCC CGGTGCAGGA ACGCCCGCGG
GACTACGTAC TCTTGAGCAT CCGCGATGTG GCAGCGAAGC TGGGCACTGA CCCAGCGACC
GTGCTGCGCA CCGTCCGTGG ACTCGGCTTT GAGAGCTACC GCGAATTCAA GGCCTACCTC
CACCAGCTTT CGATCGCGAG CGCGACCTCT TTGGACGGCA TGCAGGCGGT GAGTAAGCCG
AATTCCAGCC TGCTTTCGCA AGGCGCACGT GCGCTCGACC AGGACTTGCA GAACCTGCAG
GCATTGCGCA ATACGCTCGA CATGAATCGC ATCGTCGCAA TTGCGCGTCG CGTTTATGCA
GCGCGCAAAA TCCTTGTCCT TGGTGGCGAC CTTGCGGCGA GTCTGGCGGA GTACCTCGAG
TACAACCTCA CGCTGCTTGG CTTCACCGTG GTAGCAGGCA TCACCCCTGG CAAGACCATC
AACGCGGTCC GCAGTTTCGA TCGTCATGAT CTGGTGTTCG CCATCAGTTT CCGCCGTGGG
TTGCGCCAGA CGGTGGAAGG CATGAAGCAG GCGAGGGCCA ATGGGGCGTA CTGCGTAGGT
ATCACGGACA GCTTTGTTTC GCCGATCTGC CGCTTCTCGG ACGAGTGTTT GCTCGCCTCG
ATTGAATCTC ATCTTGGCAC GTCGTATGCC GCACCGATGA GCCTGTTTAA TGTCATGCTG
ACGATCTGCG CCCATTATCG CGAAGCCCGC ACCATGAAAA CCCTCAAGAA ACTCGACCAG
GAACAACGCC ACGGTTACCG CTGGTATCCC GTCTGA
|
|---|
| Protein sequence | MKSAAKVVVV PDHTLSFAER MERLSKKRSE LIRPVQERPR DYVLLSIRDV AAKLGTDPAT
VLRTVRGLGF ESYREFKAYL HQLSIASATS LDGMQAVSKP NSSLLSQGAR ALDQDLQNLQ
ALRNTLDMNR IVAIARRVYA ARKILVLGGD LAASLAEYLE YNLTLLGFTV VAGITPGKTI
NAVRSFDRHD LVFAISFRRG LRQTVEGMKQ ARANGAYCVG ITDSFVSPIC RFSDECLLAS
IESHLGTSYA APMSLFNVML TICAHYREAR TMKTLKKLDQ EQRHGYRWYP V
|
|---|
| |