| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acid345_3893 |
|---|
| Symbol | |
|---|
| ID | 4072228 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Koribacter versatilis Ellin345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008009 |
|---|
| Strand | - |
|---|
| Start bp | 4605793 |
|---|
| End bp | 4606626 |
|---|
| Gene Length | 834 bp |
|---|
| Protein Length | 277 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637985917 |
|---|
| Product | LytR/AlgR family transcriptional regulator |
|---|
| Protein accession | YP_592967 |
|---|
| Protein GI | 94970919 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3279] Response regulator of the LytR/AlgR family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.493272 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.267267 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTTATTTG GATCAGACAT TCTGCTTATT ACGGATGACG TTAGCTTGCG TCAAGTGCTC
GATCTCATGC TTCGCGACCA AGTGAATTCC CCGGTTGCGA CGATTTCAAG CGGTTCGGCA
GTCCAGGAAG TGATGCGGCG TGCTCCCAGG CTCGTGTTGG TGCACGATCG CGTTCGCAGC
CTCGATGGAC TGCACATCGC GACGGAAATT CTCAAGAGTT GCCCAGCGAA AGTCGTCCTC
ATCGCGAGTG ACGCGTCTCG CGCCGCGGAT GCCTACGAAC TCGGCATCAC CGACTTTCTC
ATGCTTCCCC TTCGCCGCCA GCGCGTACTC AACTGCCTCA CCCGCGCGCT CAGCGCCGCC
CCGTTCTTAC GAAAAAAGCT GCACGTGATC AGCGGCGGAC CTGCAAAGCC CCCGCTGCGC
TTTAAATCCC GGCACGGTTT CATCTTCGTG CAGGACTCGG AAATCGTCTG GATCTCGGCG
GCGGGCAATT ACCTGGAACT CCACTGCGTA TCGGGTACGC ATCGCGTACG CGGCACGCTT
CTCGAAACCT GCGCTCGGCT AGAGAACCAT CGCCAATTCC TGCGCGTGCA TCGCTCCATC
GTCGTGAACG CGGAATACCT CCGCGAAGTT CGTTCCTGGG GCGTGGACGA ATACGTGGTC
GTGCTCGACG ATGCAAAGGA ACTTCCGGTC AGCCGCAAAG ACGTGATCGA CGAGTGGGTA
GCGTCCACTC GTGGTCTGCC AAGCGAGGAC GGATGCTGTC GCATTGACGA AGCGGCCCAA
ATCTCCGGGC GAACGATCAA GACCGATCCA CAGCCCGAGG CGCGTATCAG CTAA
|
|---|
| Protein sequence | MLFGSDILLI TDDVSLRQVL DLMLRDQVNS PVATISSGSA VQEVMRRAPR LVLVHDRVRS
LDGLHIATEI LKSCPAKVVL IASDASRAAD AYELGITDFL MLPLRRQRVL NCLTRALSAA
PFLRKKLHVI SGGPAKPPLR FKSRHGFIFV QDSEIVWISA AGNYLELHCV SGTHRVRGTL
LETCARLENH RQFLRVHRSI VVNAEYLREV RSWGVDEYVV VLDDAKELPV SRKDVIDEWV
ASTRGLPSED GCCRIDEAAQ ISGRTIKTDP QPEARIS
|
|---|
| |