Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Acid345_3350 |
Symbol | |
ID | 4071268 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Candidatus Koribacter versatilis Ellin345 |
Kingdom | Bacteria |
Replicon accession | NC_008009 |
Strand | + |
Start bp | 3972096 |
End bp | 3974582 |
Gene Length | 2487 bp |
Protein Length | 828 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637985372 |
Product | ABC efflux pump, inner membrane subunit |
Protein accession | YP_592425 |
Protein GI | 94970377 |
COG category | [V] Defense mechanisms |
COG ID | [COG0577] ABC-type antimicrobial peptide transport system, permease component |
TIGRFAM ID | [TIGR03434] Acidobacterial duplicated orphan permease |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGTACCGAG TATCCCGCGC TCTATGGTCG GTCAGTGAAG CAATTGCCGG GGATGTCCGG CTCGCTTGGC GGCGCATGCT GCGCTCTCCG GCATTCACGC TTTGTGCCGT CATCTGCCTG GGGCTCAGCA TCGGCAGCAC ATTCGCCATG TTCCAGGTTG TGGACGCTTT GCTTCTGCGC AAGTTGCCCG TTCACGAACC GGACCGCCTC GTTGAGATCG CACGTTCGGA CGAAGTGAAT CTGCATTCGC CCGAAGTCTG GCGGCTGTTC AGCGAGCGGC AAATTGTGCT GTCGAAGGTG GCTGGGTTTG GCGAAGATAT ATATTCGGTC GCCACTCCTA ACACACAACC GCAAAAACTC GCGGGGATTT ATGTAACCGG CTCGTACTTC CAGGCACTCG GAGTCACGCC CGTCCGCGGC CGGGCGCTGA ACGAACTAGA CGATCGCCCT AATGCCTCTC CGGCGTGCAT ACTAAGCTTC GCGTTCTGGC GACGCCGCTT CCAAAAATCT GACAGCGCTC TCGGGCAGCA AGTCTTTGTA AATGGCCGGG CCTGCGAAAT CGTCGGCATT GCTCCGCAAG ACTTCTTCGG CACGGATGTC GGATACGGGT TTGACATCGC GATCCCGTTT GCGATGCAAC GGTCACTTCG TCCTGAGGGC ACCACGTGGC GTACGCTGTT TACGTCGCTT GCGATGTTCG GGCGACTTCG TCCAGGAGTC TCCCTAGAGC AAGCCAATGC TCAAACGGAA GCGATCTCTC GACCTATTCT CCACAGCGCG ATTCCGCATG ATGCTTCGGA GTCCTATCGC CGGAAGATTT CAACGATGTC TCTCATCGCG CGACCCATGG CGAAGGGGGC CGCGTCGGAC AGCCGCTATC GCTATGGGAA CGCCGTAAAG CTTATGCTTT GCCTTACGGG AGCTCTCTTC TTCGTCGGTT GCTTGAACCT GGCGAACCTG ACTTTGGCTC GATCTGCATC GCGGGAGCGC GAGTTTGCCA CTCGCTACGC GCTCGGCGTC ACACGCAGTC GACTGTTCGC CCAGCTGATG ACCGAAACGC TGGTCATCGT AGCAACGAGC ATGCTCCTTG CAATCCCGTT GGCGTTTGGG GGCGGCCGGA CCCTGATGGC CGCCGTTTCG TCGCACACCG ATCCGCACTA TCTCGATCTG CGGGTCGATG GTGCGTCCTT CTGCCTTTTG TGCGGCATGA CGCTGTTTTC GGTGTTGCTG ATTGGAATCT TCCCGGCGCT CCGCGCGATT CGTGAACCAT TCGCTCTTCA ACCGCACCGC GCCGACGCTT CCCATTCCTT CGGTCGCATC GGACCGGACG TGCTTTCTGT GGCCATTCAG TTTGCGTTTT CGATGGCGAT GGTCGCGATC GCCCTCGTAC TCGTGAAAAC AGTTCGGGAT CTTTCGTCTG CCGATCTCGG ATTTGATCAG CGCTCCGTGT TGCGTGTCGA CGTGCAGCGG CTCGGTGAAG AACCCGATGG GACGCGAGAT GAACTTGTAG CACAGCGCCT GCAGCAGCAC CTCGCGGCAG ACCACTCGAT CGTATCGATT GGGCGAACCA AGCCGCTGCT CGATGCTTCC ACTGTTCGCA TCTCCACCAT GACTGCGAGC GGTCGTGAGA AGCAGATCCT CGCGTACGTG GTGTACATCG ACCCCAGTTA TTTGCCGGCG TTGCGCATTC CTGTGAGATC CGGCCGCAAC TTCGCTGCCT CTGATGACCA GGGTACAAAT CCTGTAGCAA TCTTAAGCAG AACCGCGGCC CTGGCACTCT TCAATGAGAA TGTCGCGGGT CCCTACACTT TCCGCCAGGC TCTTGGTAAA TCGAACCCTG AATCGGTGAC GGTGGTTGGA GTTGCCGCCG ACGCGCAATA TGGCAAACCA AATGATCCCG CGCTGAACGT GATCTATAGG CCAGTCGCAC AATGCGGTAC CGCCTGCGCC GGCATTGGCC AGTTTTACAT CCGTTATCAA GGGCCGCTGG CAGTGCTTCA ACGCGAAACT GATCGGATAG CCGATGAGGT CGATTCCCGC CTCGTACTCG ACAGCACGCC ACTCGAGCAA GAAAGCAGGT CCCTCATCCA GCAGGAGAGG TTGACCGCAA CACTCGCCAC CATGGCCGGC AGTTTCGTTC TGATTCTCGC TGCGATCGGC ATTTTCGGCG GGGTTTCGAT CGGCGTTGAG CGGCGCATAA AGGAGATTGG CATTCGGCTG GCACTGGGGG CGCAGAAACG CCACGTGTAC CACACGATGC TCAGGCATAC CTCCGCGGCG GTCCTCGCTG GAGCAATCCT GGGTGGAGTG TTCGGATTCG AAGTGATTGG CGTGGTCCGA CAGAGTTTCT ACGGTGTCTC CGCTGCCACT CTCACGCCGC TGCTCACCAC GGCAGCATTG CTCATTTTCG TCGCGCTCGT TGCAGGCGCG ATTCCTGTCG AACGCGCTCT GGTTTCGGAT CCGGTTTCCA CCCTGCGCTC GGAGTAG
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Protein sequence | MYRVSRALWS VSEAIAGDVR LAWRRMLRSP AFTLCAVICL GLSIGSTFAM FQVVDALLLR KLPVHEPDRL VEIARSDEVN LHSPEVWRLF SERQIVLSKV AGFGEDIYSV ATPNTQPQKL AGIYVTGSYF QALGVTPVRG RALNELDDRP NASPACILSF AFWRRRFQKS DSALGQQVFV NGRACEIVGI APQDFFGTDV GYGFDIAIPF AMQRSLRPEG TTWRTLFTSL AMFGRLRPGV SLEQANAQTE AISRPILHSA IPHDASESYR RKISTMSLIA RPMAKGAASD SRYRYGNAVK LMLCLTGALF FVGCLNLANL TLARSASRER EFATRYALGV TRSRLFAQLM TETLVIVATS MLLAIPLAFG GGRTLMAAVS SHTDPHYLDL RVDGASFCLL CGMTLFSVLL IGIFPALRAI REPFALQPHR ADASHSFGRI GPDVLSVAIQ FAFSMAMVAI ALVLVKTVRD LSSADLGFDQ RSVLRVDVQR LGEEPDGTRD ELVAQRLQQH LAADHSIVSI GRTKPLLDAS TVRISTMTAS GREKQILAYV VYIDPSYLPA LRIPVRSGRN FAASDDQGTN PVAILSRTAA LALFNENVAG PYTFRQALGK SNPESVTVVG VAADAQYGKP NDPALNVIYR PVAQCGTACA GIGQFYIRYQ GPLAVLQRET DRIADEVDSR LVLDSTPLEQ ESRSLIQQER LTATLATMAG SFVLILAAIG IFGGVSIGVE RRIKEIGIRL ALGAQKRHVY HTMLRHTSAA VLAGAILGGV FGFEVIGVVR QSFYGVSAAT LTPLLTTAAL LIFVALVAGA IPVERALVSD PVSTLRSE
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