| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acid345_2488 |
|---|
| Symbol | |
|---|
| ID | 4072112 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Koribacter versatilis Ellin345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008009 |
|---|
| Strand | + |
|---|
| Start bp | 2941696 |
|---|
| End bp | 2942202 |
|---|
| Gene Length | 507 bp |
|---|
| Protein Length | 168 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 637984505 |
|---|
| Product | shikimate kinase |
|---|
| Protein accession | YP_591563 |
|---|
| Protein GI | 94969515 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0703] Shikimate kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.995704 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGCTCCG GGAAAAGCAC GGTTGGCGCA CGCCTCGCCG AAAGGCTGGG GTGGGCGTTT
GTTGATCTCG ACGCGGAGAT CGTACGTACC CAGGGACAAG CGATTGCTGA GGTTTTTCGC
AATCAAGGCG AAGCGCACTT CCGCCAAGTG GAACATGAGG CGCTGCTGCG GATATTGAAT
ATGCTGGGCG GCCCCACGGT AATCGCACTT GGCGGAGGGA CGTTCATCCA GGAGCGCAAC
CGTGACCTGC TCTGCCAGCG TGGAGCGACA ACGATCTATC TGAGCGGCGA ATTTGCGGTT
CTTTTGGAGA GATGCGGCGC CGAGCAAGGC ACCCGGCCAC TGGCACAGGA TATTGAGGAG
TTTCGAAAAC TTCATGCCGA TCGCCAGCCC ATCTACCGTT CTGCCGAGTT GACCGTCGAA
ATCGGAAACC GGTCGCCCGA AGAAATATCG AGCGAGATTG TGGCAACGCT TGAGAAGAGG
AACTCACAAT CCGCGGTACC TGAATAG
|
|---|
| Protein sequence | MGSGKSTVGA RLAERLGWAF VDLDAEIVRT QGQAIAEVFR NQGEAHFRQV EHEALLRILN
MLGGPTVIAL GGGTFIQERN RDLLCQRGAT TIYLSGEFAV LLERCGAEQG TRPLAQDIEE
FRKLHADRQP IYRSAELTVE IGNRSPEEIS SEIVATLEKR NSQSAVPE
|
|---|
| |