| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acid345_0447 |
|---|
| Symbol | |
|---|
| ID | 4071694 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Koribacter versatilis Ellin345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008009 |
|---|
| Strand | + |
|---|
| Start bp | 528196 |
|---|
| End bp | 529512 |
|---|
| Gene Length | 1317 bp |
|---|
| Protein Length | 438 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 637982451 |
|---|
| Product | outer membrane efflux protein |
|---|
| Protein accession | YP_589526 |
|---|
| Protein GI | 94967478 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.109934 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGACCGC GGCATCGATG CAATCAACCC GTTTCAGATT CAACTACATC CCCCTCATTT
CATTTTCAGG CATTTGCTCT GTCAGCACTT CTCTTGCTCC TCCTCGGCGC TGGGATGGGG
CAGACTGCGA CTCGCATCAC CCTCGATGAG GCGGTGGATC TCGCCCTTGC GAAAAGCCCT
GCGTTACAGG CGCAGCGCAC GCTGATCTTG CAGAACGAGG CACAGGAGAT TACTGCCAAT
CTTCGACCAA ATCCCACGTT AGGGGCGGAC AGCCAATTCG TTCCGATTTT CAGCCCGCAG
GACTTTTCCG GAGACTACCT CGATCAAGCA CAGCAGTTCG ATATTGGCGT CGGGTATCTC
TTCGAACGCG GTCACAAGCG GCAGAGGCGT TTACAAGCGG CCCGTGATCA GACGGCCGTC
ACGAAGGCTC AGGTGGCCGA CGCCGAGCGC ACCCTCGCTT TCAACATAGG GCAGCAATTC
GTAAGCGTAT TGCTCGCAGA ATCCACCTTG GACTTCGCTT CGCAGGACTT GAAGAGCTTT
CAGCAGACGG TCGATATCAG CGAAACGCAA TATAAGGCTG GATACATCAG CGAAGGCGAT
TACCTGAAGA TCAAGCTGCA ATTGTTGCAG TTTCAGACGG ACGTCTCTTC TGCACGACTT
GCTAAGGTTC AAGCGCTCGC GGGATTGCGG CAATCGCTCG GATACAACAC GGTTCCCGTC
GACTTTGACG TAGCCGGCGA CCTAGCTTTT CAGCCGCTGA AGGGGAGAGT GGAGGATCTG
CAGATTCTGG CCATGCGCGA GCGGCCTGAT TTCCGAGCCT CTCAGCTAGG CGTGACCGCA
GCACAAAGCC AGATTCAACT CGCCAAGGCC AACGCCAAAG TAGACGTAAA TGGCACCTAC
GACGTCTCAC ATGTCGCCGG CGCGACGAGC GGGTCCATCT TCGTGAGTTT CGATCTTCCC
ATCTTTAATC GGAACCAGGG AGAAATCGCG CGCACCCGGT ATGCTCTCAC TCAGGCGCAG
GCGCAGGAAC AAGCAGCGAA TGACACGGTC ATGACAGATG TATTGAATGC TTACGAGGCA
GTCGGCAGCA ACGAGCAGGT GGTGCAGTTG TACATTTCCG GATACCTCAA GGAATCGCAG
GATTCTCGTG ACATCAGCGA GTATGCCTAC AAGCGCGGTG CCGCCAGCCT GTTGGATTAC
CTCGACGCCG AGCGCAGTTT TCGCTCAGTG CAACTGGCGT ATCGCCAATC ACTGGCGTCT
TACATGACGG CAATCGAACA ACTTAAGGAA GCTGTAGGGA CGAGGAAGCT GCCATGA
|
|---|
| Protein sequence | MRPRHRCNQP VSDSTTSPSF HFQAFALSAL LLLLLGAGMG QTATRITLDE AVDLALAKSP
ALQAQRTLIL QNEAQEITAN LRPNPTLGAD SQFVPIFSPQ DFSGDYLDQA QQFDIGVGYL
FERGHKRQRR LQAARDQTAV TKAQVADAER TLAFNIGQQF VSVLLAESTL DFASQDLKSF
QQTVDISETQ YKAGYISEGD YLKIKLQLLQ FQTDVSSARL AKVQALAGLR QSLGYNTVPV
DFDVAGDLAF QPLKGRVEDL QILAMRERPD FRASQLGVTA AQSQIQLAKA NAKVDVNGTY
DVSHVAGATS GSIFVSFDLP IFNRNQGEIA RTRYALTQAQ AQEQAANDTV MTDVLNAYEA
VGSNEQVVQL YISGYLKESQ DSRDISEYAY KRGAASLLDY LDAERSFRSV QLAYRQSLAS
YMTAIEQLKE AVGTRKLP
|
|---|
| |