Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Acid345_0308 |
Symbol | |
ID | 4068585 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Candidatus Koribacter versatilis Ellin345 |
Kingdom | Bacteria |
Replicon accession | NC_008009 |
Strand | - |
Start bp | 330534 |
End bp | 331799 |
Gene Length | 1266 bp |
Protein Length | 421 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 637982311 |
Product | secretion protein HlyD |
Protein accession | YP_589387 |
Protein GI | 94967339 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.742688 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGACCC TGTTGCTGTT CGCGACTACG TCGCTATTTT TGCTGGCCGG CTGCAGCAAG CAAGAGAAGG CGCCTACCCC CGAAGTTGAA GTACAGGCCG AGGCTGTCGC AGCCCATGAG ATCACCTTGC ACGTTCAGGG CGACGCCGTA CTATTCGCGT TACAGCAGGC CGCGATCACT CCGAAGGTAA GTGCACCAGT GCGGAAGTTC TTCGTACAGC GTGGTGCGAG AGTGCATCGT GGACAACTGC TGGCCCGCCT GGAATCGCGC GATGTAAGCG CCGCGGCGGA GGATGCGCGT GGAGGCTTTC AACAGGCGGA GTCGTCGTAC AAGACAGCTA CCCAAGCCGC GGTGCCTGAG GAATACCAAA AGGCTGAACT CGACTACGAA CAGGCCAAAA CAAACCTCGA CGTTCAGCAG AAGATATTCG ATGCACGACA GAAGCTCTTC CAGGAAGGGG CGATTCCCGG CCGCGACCTC GATACAGCGC GCCTGAACCT CGTCCAGGCG CAGAGCCAAT TCAACGAGGC CTCCAAGCAC CTGGAATCTG CTAAGGCAGT TACTCGTGAA CAGTCAATGC GGAACGCCGA AGGCCAACTA CAGTCAGCGC GCGGAAAGCT GCAAGTGGCC GAAGCCTCAG TCAGCTACAC CGAGATTCGC AGTCCGATTG ATGGCGTGGT CACGGATCGT CCTTTCTTCG ACGGTGAAAT GACGACACCC GGGACGCCGC TGATCACGGT GATGGAAACT TCGTCGCTGC TTGCCAAAGC GCATCTACCT CAGGCGGAAG CGCAACAGCT GAAACCTGGT GATGACGCGA CGGTGACGGT GCAGGGACTT GAAAAACCAG TTCCAGGAAA AGTGACGATG GTTAGCCCCG CGCTCGATCC TGGAAGCACA ACTGTGGAAG TTTGGGTGAA GGTCGAGAAC AAAGAGGGTG CACTGAAGCC GGGAACGGCG GCTCGCGTCG CGATTGCGGC GCGAACCTTG AAGGACGCTC TGACCATTCC GAGTTCGGCC GTTCTAAAGG ACGACTCAGG CAAAGCGTTC GTAATGGTGG TTGAGAATGC GATGGCTCGC AAACGCGATG TCCAGATCGG TATAACCGAT GGCGACGACG TTCAGATCGT CGAAGGGTTG AAAGCGGGCG AGCAGGTCAT TACCACGGGT TCATTCGGTC TCGACGATAA GACTAAAGTC AAAGTCGTCG CGGCCGAGAA GGCATCCGAT AGCGCAGATG ATAAGAAGTC AGAGGGCAAA GATTAA
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Protein sequence | MKTLLLFATT SLFLLAGCSK QEKAPTPEVE VQAEAVAAHE ITLHVQGDAV LFALQQAAIT PKVSAPVRKF FVQRGARVHR GQLLARLESR DVSAAAEDAR GGFQQAESSY KTATQAAVPE EYQKAELDYE QAKTNLDVQQ KIFDARQKLF QEGAIPGRDL DTARLNLVQA QSQFNEASKH LESAKAVTRE QSMRNAEGQL QSARGKLQVA EASVSYTEIR SPIDGVVTDR PFFDGEMTTP GTPLITVMET SSLLAKAHLP QAEAQQLKPG DDATVTVQGL EKPVPGKVTM VSPALDPGST TVEVWVKVEN KEGALKPGTA ARVAIAARTL KDALTIPSSA VLKDDSGKAF VMVVENAMAR KRDVQIGITD GDDVQIVEGL KAGEQVITTG SFGLDDKTKV KVVAAEKASD SADDKKSEGK D
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