| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acid345_0146 |
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| Symbol | |
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| ID | 4069731 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Candidatus Koribacter versatilis Ellin345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008009 |
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| Strand | + |
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| Start bp | 154746 |
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| End bp | 156353 |
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| Gene Length | 1608 bp |
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| Protein Length | 535 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637982146 |
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| Product | protein-export membrane protein SecD |
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| Protein accession | YP_589225 |
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| Protein GI | 94967177 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00836416 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.00269224 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAGAAGA ACCTTACCTG GAAAGTTGTC GTCATCGTTG CCGTCCTGTT GGTGTTTGCG
TTTGGCATTA TCGGCAATCC TGCGGAAGTG AAGTGGGACA AAGAAGGGCT GAAAACTGCC
CTGATGAACC GCATTCACCT CGGCCTTGAT CTTCGCGGCG GCACCCACCT TATCCTTCAG
GTGGTGGTGA ACGACGCTGT CAACGCCGAG ACCGATCGCG CGATTGAGCG CATCAAGGAA
GACCTTGCCA ACAATAAGGT CACCTATAGC GACATCACGA AACCTGATGC CGCGAATGCG
CCAGAACGCA TTGCGATCAA GGGCATTACG CCCGATGGCG CGACCACGCT GCGACGCGTC
TCAGACGAGC GGTTGCCGGA ATACAGCTTT GGCAGCGGTC CCGAGGGCAG CTACACGCTG
ACAATGAAGC CGGCGCAGCT GAAAGACTTG AAGGACCGCG CCGTACAGCA GGCGATCCAG
AAGATCCGCG AGCGCGTGGA CAGCCTCGGC GTGAGCGAGC CGGTGATCCA GGAACACGGC
CTCGGCGATT ACCAGATTCT CGTGCAGCTT CCCGGCGTGG ATGATCCAGC GCGTGTGAAG
GAAGTGATGC AATCCACCGC GATGCTGGAA ATCCGGCAGG TGTTTGGTGG ACCGTACTCG
AAGGAATCGG AAGCTGCGCA GGGGCAAATG CAGCAGCCGG ACACAGTGGT CCTGCCGGGC
AAGAGCGAAA GCGATCCCGG AACCCAGGTC TTCTACCTGG TGGCGCGCAG CTCGGCGGTT
GCCGGACATG ATTTGCGCCA GGCGCGCGTT GGCCGGGACC AGAACGGCGG CGCGAACGTC
CAGTTCAACC TGACCCGCGA TGGCGGCGTG CGGTTCTCGC AATTCACCAG CGCCCACGTG
GGCGACAAGC TGGGCGTGAT TCTTGACGGC AAGGTGATGG AAGTCGCGAA CATCAAGTCC
GAGATCAGCG ACTCGGGCGA GATTGAAGGC CGCTTCACCG ACCAGCAGGC CAGCGATTTG
GCCCTGATCC TCAATTCGGG CGCATTGCCG GCGAGCATCA AGTACCTCGA AGAGCGCACC
GTTGGTCCGT CGCTGGGTAT GGATTCGATT CGCCAGGGCG TACGTGCTGC GATCATCGGC
TTCGTCGCGG TGATCATCTT CATGCTGATT TACTACAAGG GCGCGGGCAT CAACGCCGAC
CTGAGTTTGC TACTGAACCT GGTAATTTTG CTTGGGTTCA TGGGCTACTT CGGCGCGGTG
CTTACGCTGC CGGGCATCGC GGGTGTGATC CTGACCGTCG GTATGGGTGT GGACTCCAAC
GTCCTGATCT TTGAGCGCAT TCGTGAAGAG CTGCGCAACG GCAAGACGCC GCCTTCGGCA
GTGGAGCAGG GATTTGGGCA CGCGTGGTTG ACGATCATCG ACACCCACGT CACCACGATC
GTTTCGGCGA TCATCCTGTT CCTGTTCGGA ACCGGCCCGG TAAAGGGATT CGCGGTGACG
CTGAGTTTCG GTCTGTTCGC GAACCTGTTC ACGGCAGTAT TCGTCTCGCG TGTGATCTTC
GATTCGATCC TGAATCGCCA TCAACGCGGC GAGGCATTGA GCATTTAG
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| Protein sequence | MKKNLTWKVV VIVAVLLVFA FGIIGNPAEV KWDKEGLKTA LMNRIHLGLD LRGGTHLILQ
VVVNDAVNAE TDRAIERIKE DLANNKVTYS DITKPDAANA PERIAIKGIT PDGATTLRRV
SDERLPEYSF GSGPEGSYTL TMKPAQLKDL KDRAVQQAIQ KIRERVDSLG VSEPVIQEHG
LGDYQILVQL PGVDDPARVK EVMQSTAMLE IRQVFGGPYS KESEAAQGQM QQPDTVVLPG
KSESDPGTQV FYLVARSSAV AGHDLRQARV GRDQNGGANV QFNLTRDGGV RFSQFTSAHV
GDKLGVILDG KVMEVANIKS EISDSGEIEG RFTDQQASDL ALILNSGALP ASIKYLEERT
VGPSLGMDSI RQGVRAAIIG FVAVIIFMLI YYKGAGINAD LSLLLNLVIL LGFMGYFGAV
LTLPGIAGVI LTVGMGVDSN VLIFERIREE LRNGKTPPSA VEQGFGHAWL TIIDTHVTTI
VSAIILFLFG TGPVKGFAVT LSFGLFANLF TAVFVSRVIF DSILNRHQRG EALSI
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