| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aboo_1028 |
|---|
| Symbol | |
|---|
| ID | 8827985 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aciduliprofundum boonei T469 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_013926 |
|---|
| Strand | - |
|---|
| Start bp | 987756 |
|---|
| End bp | 990023 |
|---|
| Gene Length | 2268 bp |
|---|
| Protein Length | 755 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | |
|---|
| Product | CRISPR-associated protein, Csm1 family |
|---|
| Protein accession | YP_003483399 |
|---|
| Protein GI | 289596703 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.00145134 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACGATA TCCAAGAAAA AGTTCTGGTT TTATCTGCTC TTTTGCATGA TATAGGAAAA
TTGAATCAAA GGGCTTCTAC AAGGTTCAAA GAGAAGAAAC ACGAAGTCTT CGGCGCTGAA
TTTTTGAATG AGAACCTGAA TGCTAGTCCA GAGATAAAAG ATGAAACCAT TAAGCTTGTG
ATTTCTCATC ATCAAATATC TTACGAGGGA AAATACCCGG AGCTTTTGAA AATACTGAAG
GACTCGGATG GGGAATCGGC AGAGCACGAT AGAATGGAGT CTGAGGGTAT AGATACAAAT
ATCAACCAAA CTCCACTCAT ATCGGTTTAT TCCTATATAG ACATAGGATT TGGAAGCAAG
GGGAAGGTAG GTTATTCTTT GGCTTCACTT GAGAGAAAAC TCCAGTATCC AAGTACATAT
GCAACGAACT CCCAAGTTCT ATACGGTTCA ATAGAAGACA AGCTAAAGAG AGAATTAAAA
AACCTTACCA TTCAAGGCAA GGAGGATATA AACACACTCC TCTACATTCT TTTGAAATAC
ACCAAGTATG TACCATCGGC CATCTATGTT AGCGTCCCAG ATATCCCTCT ATACGACCAT
CTAAAAACCA CGGCTGCCAT AGCACTATGC AAGTACAGGA GCAATAAAAA AGAGAAGTAC
ACAATTATAA TGGGTGATTT ATCTGGGATA CAAAATTTTA TATTTTACAA TTTAAAAGGT
GGCGAAGAGC AGGTTGTGGA TGAGAAAGGT ACTAAAAGAA TGCGTGGAAG GAGCTTGCTG
ATAAACTTAA TAATAGATTC TGCAGTGAGG TATATACAAG AAGAGCTTGA CTTGTATGAT
TTCAATATCC TATGGCAAAG CGGTGGAAAT TTCCTGATGC TTGTTCCTAA TGTAGACGGC
ATAGACGAGA AGCTAGTGGA AATGAAGAGA AAGGTGAATG AGTTCCTCTT GAACGAATTT
GGAAGGCTAT ACCTCAATAT TGCTTGGATT CACAAGGATA ACTTGAACAA TTTCAGCGAA
ATACTGTATG AATTGCATTC AAAGATGGAC GAAGAGTCAA AGTCCAAGAA ATATATTGAG
TTTGTGAGAG ATGAGGATTT CTATGTTAGC CCTTCAAGAG ATAAATACAT ATGCCCAGTT
TGTGGAGTGC ATTATGTGAA TGATTCAAAT GGGATATGTG ATACCTGCCA GAGAACAGCG
GAGCTTGGGG GATTCATCGG AAAAGGCCAG TATTTGATAA GAAGCTTAGG CAAGGATGGA
CATTTCACAT TCAAATATGG AGATCTCAGA ATTTCTTACA CAATATCGGA GGATTTCTAT
GGATACGAAG ATGATGAAGT GTTTTCTATA GAGGATTTCA ACATACCTTC GGTGGGTAAG
GTTAGAGGGT TCAAACTCTT GAAAACATAC ATTCCCAGTG TATATGGCAA AGTCCTTAGC
ATCTCGAAGC TTTTAGCTCC CGGCACTTCC TTAGAAGATA GAATGACCTC TAACGCCACT
ACAAAGATGG GAATTTTCAA AGCGGATGTT GATTGCTTAG GTGAGATATT CAAGGAAGGT
TTCAAAGAAG ATCTGAGGAG AATAAGCAGG ATATCAACCC TTTCTTTCTT GATGGACCTG
TTTTTCTCCG TGGAAGTTAA CAATATTGCT AAGAAGAACA ACATTTATGT TATATTCTCT
GGTGGGGATG ACCTTACAGC AGTGGGCAGG TACGATGAGA TAATTAAATT TGCGTTGGAT
GTGCGAGATT CCTTTGCCAA GTGGACAGGG GGTAATGAGA ATTTGCATAT ATCCGCATCT
ATAGTTTTCT TTGATGAGAA ATTTCCTATT CGCAGGGCTG TTAATGTTGC TGAAGAGCAT
CTTGGAGATG CAAAGGATTA CTCTGCAGAT GTGAGCATGT GCGTAGAGAG AGGAAATAAG
ATAAAGATCT TTGAAGATGT ATTGTCTTGG GACGATTTCA AAGCACAGGT GGACATGGGC
AACGAACTTT GGGAAGCGCA GAAAAAAGGA GAAATTTCAT CATCTTTATC GCATGTTCTC
TTGGTTCTCC ATAAGCTTAG TCCTTCATTC TTTGCAGATA AACCTCTGGG GAAAGGAGAT
GTTGTTATTC CCAGTCCAAA GCCATATTTG AGGTATTATT TTGCTCGTAG GAAAGGAAGT
AGATACGATT TGCTTGATAA ATTATCCCAA GAGGGTATTT TCAAGCACAT TCCAGTTGGA
GTGTCAATAT GGGTTATGAG TAGAAAGTAT GGAAAAGAGG TGAGTTAG
|
|---|
| Protein sequence | MNDIQEKVLV LSALLHDIGK LNQRASTRFK EKKHEVFGAE FLNENLNASP EIKDETIKLV
ISHHQISYEG KYPELLKILK DSDGESAEHD RMESEGIDTN INQTPLISVY SYIDIGFGSK
GKVGYSLASL ERKLQYPSTY ATNSQVLYGS IEDKLKRELK NLTIQGKEDI NTLLYILLKY
TKYVPSAIYV SVPDIPLYDH LKTTAAIALC KYRSNKKEKY TIIMGDLSGI QNFIFYNLKG
GEEQVVDEKG TKRMRGRSLL INLIIDSAVR YIQEELDLYD FNILWQSGGN FLMLVPNVDG
IDEKLVEMKR KVNEFLLNEF GRLYLNIAWI HKDNLNNFSE ILYELHSKMD EESKSKKYIE
FVRDEDFYVS PSRDKYICPV CGVHYVNDSN GICDTCQRTA ELGGFIGKGQ YLIRSLGKDG
HFTFKYGDLR ISYTISEDFY GYEDDEVFSI EDFNIPSVGK VRGFKLLKTY IPSVYGKVLS
ISKLLAPGTS LEDRMTSNAT TKMGIFKADV DCLGEIFKEG FKEDLRRISR ISTLSFLMDL
FFSVEVNNIA KKNNIYVIFS GGDDLTAVGR YDEIIKFALD VRDSFAKWTG GNENLHISAS
IVFFDEKFPI RRAVNVAEEH LGDAKDYSAD VSMCVERGNK IKIFEDVLSW DDFKAQVDMG
NELWEAQKKG EISSSLSHVL LVLHKLSPSF FADKPLGKGD VVIPSPKPYL RYYFARRKGS
RYDLLDKLSQ EGIFKHIPVG VSIWVMSRKY GKEVS
|
|---|
| |