Gene Aboo_1021 details

Gene Information

• Locus tag: Aboo_1021
• ID: 8827978
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aciduliprofundum boonei T469
• Kingdom: Archaea
• Replicon accession: NC_013926
• Strand: -
• Start bp: 980272
• End bp: 980982
• Gene Length: 711 bp
• Protein Length: 236 aa
• Translation table: 11
• GC content: 41%
• Product: CRISPR-associated protein Cas6
• Protein accession: YP_003483392
• Protein GI: 289596696

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 0.000207098
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGATTGC TCATTAAGCT AGTGCCAGAG AAATTTTTAC CATTTTCAAA GGTAAACAAG 
CATACGATTC AAGGAGCCAT ATACTCGCTC CTTGATGGAA CAGAGTTCTC AGATTTGCAC 
TCTAAAAATG GGTTTAAGTT CTTCACATAC TCCGATTTAT TCCCTCCCGG AGATTTCTAT 
CCAAATAAAG AGAAAAACTT GATAGTATCC TCGCCAAATC CCAAGTTCAT AGGTGAGCTT 
TACTCAAGAT TGAGGGATTT AGAGCATATT TACCTATCCG ATGGCCCAAT GAAAGTTGCA 
GAGCTCAAAA AGTTCAAGGT AAAAACCACA GGAAAGTTTA GGAGTGGAAG CCCAGTGGTG 
ATTCAAAAGG ATAATAAGAA GAGCAAGTAC TTTTCATTCA GGGACGGGGG AAGCATGCGC 
TTTTTCATGG ATAGATTGAA AGATAATGCA GTGAAGAAGT ATAATGTGTA CTATGATGAA 
GAGCTGGAGC TGGACGAGGA CCTTTTTGAC CTGCTTCAAT TTCAAAAGGA GGTTTCCGTG 
GTGGTAAAAA AGGATGAGAA GACATTCATA GTAATAGGCT CAGTGTGGTC CTTGCTTCAA 
AAGAGGATTC CCAAGGGATA TGGCAAGTTT TACAGGTTCA TAACGGACTG TGGAATAGGG 
GAAAAGAACT CCCTTGGATT CGGGTTTTTG AATCCCATAG ACAATGAGTG A 

 

Protein sequence

MRLLIKLVPE KFLPFSKVNK HTIQGAIYSL LDGTEFSDLH SKNGFKFFTY SDLFPPGDFY 
PNKEKNLIVS SPNPKFIGEL YSRLRDLEHI YLSDGPMKVA ELKKFKVKTT GKFRSGSPVV 
IQKDNKKSKY FSFRDGGSMR FFMDRLKDNA VKKYNVYYDE ELELDEDLFD LLQFQKEVSV 
VVKKDEKTFI VIGSVWSLLQ KRIPKGYGKF YRFITDCGIG EKNSLGFGFL NPIDNE