| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_3457 |
|---|
| Symbol | |
|---|
| ID | 4667378 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax citrulli AAC00-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008752 |
|---|
| Strand | + |
|---|
| Start bp | 3819672 |
|---|
| End bp | 3820757 |
|---|
| Gene Length | 1086 bp |
|---|
| Protein Length | 361 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 639824653 |
|---|
| Product | ABC transporter-related protein |
|---|
| Protein accession | YP_971788 |
|---|
| Protein GI | 120612110 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG3842] ABC-type spermidine/putrescine transport systems, ATPase components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.861719 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCACTTG AACTCGAACG CACGCGCGTG GACATCGTCC GCTGCGCGAA GACCTATGCC
GGCGGCGCGC GCGGCCTGCA GCCCACCGAC CTGGCCGTGG AGCCGGGCGA GGTGCTGGCG
CTGCTGGGCC CCTCGGGCTG CGGCAAGACC ACGCTGCTGC GCCTGATCGC CGGGCTGGAG
GCGCCGGACG CCGGCACCCG CATCGCCTTC GGCGGCGCCG ACGTGACGCA GCTGCCCATC
GAGCAGCGCG GCGTGGGCAT GGTGTTCCAG CACTATGCGC TGTTTCCGCA GATGACGGTG
GAGGGCAACA TCGGCTATGG CCTGAAGATC CGCGGCACGC CCGAGGTGGA ACGCCGCCGC
GTGGTGGGCG AGCTGATCGA CCTGGTGCGC CTGAACGGGC TGGAGAAGCG CCGCCCCGCG
GAACTTTCCG GCGGCCAGCG CCAGCGCGTG GCCCTGGCCC GCGCCGTGGC GGCGCGCCCG
CGCGTGCTGC TGCTGGACGA GCCCCTCACC GCACTCGACG CCAAGCTCAA GGAATCGCTG
CGCGACGAAC TGGCCGAGCT GCTGCGCCGC CTGCACATCA CCGCCATCCA CGTCACGCAC
GACCAGCAGG AGGCGCTCGC CATCGCCGAC CGGCTGGCCG TGATGCAGGC CGGGCGCATC
GTGCAGGTGG GCGACGGCGA GACGCTCTAC CGCACCCCGG CGCACCCGTT CGTGGCATCC
TTCCTGGGGC GGGTGAACCG CCTGGTGTTG CCCGAGGCGG GCGCACGGCA CGCCGCGCCG
GGCTGTATCG ATCTGGGCGG GCTGGAACTG CCCGTGCCGC CAGGCGCCGC CTGCAGCGCC
TGGCTGGTCC GGCCGGAAGA CGTGGAAGTG GAGCCTACCG TCCTGGGCCA ACCCGGCTGG
GGGCATGCCG ACGTGACGCA CCGCAGCTTC CTGGGCGACC GCGTGCAGCT CACGCTCAAC
GTGCCCGGCC AGGCCCCGCT GCGCGCCGAC GTGGCCCGCG ACCACGCCGC CCGCGCGGGC
GATGCGGTGG CCGTGCGCAT CGCGCCGCAG CGGCTCATGC CGCTGGCCGA AGACACTGCC
GCCTGA
|
|---|
| Protein sequence | MALELERTRV DIVRCAKTYA GGARGLQPTD LAVEPGEVLA LLGPSGCGKT TLLRLIAGLE
APDAGTRIAF GGADVTQLPI EQRGVGMVFQ HYALFPQMTV EGNIGYGLKI RGTPEVERRR
VVGELIDLVR LNGLEKRRPA ELSGGQRQRV ALARAVAARP RVLLLDEPLT ALDAKLKESL
RDELAELLRR LHITAIHVTH DQQEALAIAD RLAVMQAGRI VQVGDGETLY RTPAHPFVAS
FLGRVNRLVL PEAGARHAAP GCIDLGGLEL PVPPGAACSA WLVRPEDVEV EPTVLGQPGW
GHADVTHRSF LGDRVQLTLN VPGQAPLRAD VARDHAARAG DAVAVRIAPQ RLMPLAEDTA
A
|
|---|
| |