Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Aave_2271 |
Symbol | |
ID | 4665545 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidovorax citrulli AAC00-1 |
Kingdom | Bacteria |
Replicon accession | NC_008752 |
Strand | - |
Start bp | 2501093 |
End bp | 2502160 |
Gene Length | 1068 bp |
Protein Length | 355 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 639823476 |
Product | porin |
Protein accession | YP_970623 |
Protein GI | 120610945 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3203] Outer membrane protein (porin) |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0154536 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 1 |
Fosmid unclonability p-value | 0.000000413543 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | GTGAATACGC ATTCCAGAAC AACCCTGGCG GCCGCGGCCG CGCTGCTGGC TGCGGCCGGT ACATTGCCCG GCGCCGCGCA CGCGCAGTCC GCCGTCACGC TCTACGGCCG CGTGGTCGCC GGCGTGGAAT ACATCGACAA GATCGCCGAC CCCGCCACCG GCCAGGCCCA TTCGCTCACG CGCGCCGCCG ACAACCAGTG GGGAACGAGC ATGATCGGCT TGCGCGGCAA GGAAGACCTG GGCGGCGGCC TGAGCGCCGT CTTCAACCTG GAAGGCGGCT TCAGCGCCAC CAAGGGCACG ACCGGCACCG CGTTCTTCAA TCGCCGTTCG CTGGTGGGCC TGAGCAGCGC GAGCTGGGGT ACCTTGATGG TGGGCAAGAA CCTCTTCAAC AGCAACGACG TCTGGAACAT CGATCCCACG GGCCAGCAGT TCATGAGCAG CGCGACGCTG GTGCGCGGGC GCAACTGGCC GGGCGTGAAC AACCTCATCG AATACACCAC GCCCAACTTC GGCGGCTTCA CCGCCAACGT GCAGGTGGGC CTGGGCGAGC AGACGGGCTC GAACAAGCAG TTGCGCAACG AAGGCCTGTC GCTGGCCTAC GCCGCGAACG ACCTGGAAGT GCGCGCCATG TTCAACAGCC GGCGTGATGC CAACGGCAAC TACAGCGACG CCTACAACTA TTCCAGGGAC GCGATCCTGG GCGGTACCTA CCGCATCGGC GCGGCCAAGC TGTTCGCCGC CTACGAAGCC ATCTCCGCCC CCGACGCCGT GGCCGGCGCG CCCAGCAAGC TCAAGCACGG CTGGCTGGGC GTGCGCTACG ACGTGACGCC CGCGCTGACC CTGATCGGCG CGGGCTACCG CGTCAGCGCC AACCGGGGCA ACGGCAATGC GACGCTGCTG ATGGTGGGCG CGGACTACTA CCTGTCCAAG CGCACCTTCC TGTACGCGTC GCTGGGCGGC GTGAACAACA GCTCCACCGC CAACTACGCG GCCGACGTCA CCGTCAACGG CCCGGGCGCC GGCGCATCGC AGCGCGCCGT GTACTTCGGC ATGGGCCACT CGTTCTGA
|
Protein sequence | MNTHSRTTLA AAAALLAAAG TLPGAAHAQS AVTLYGRVVA GVEYIDKIAD PATGQAHSLT RAADNQWGTS MIGLRGKEDL GGGLSAVFNL EGGFSATKGT TGTAFFNRRS LVGLSSASWG TLMVGKNLFN SNDVWNIDPT GQQFMSSATL VRGRNWPGVN NLIEYTTPNF GGFTANVQVG LGEQTGSNKQ LRNEGLSLAY AANDLEVRAM FNSRRDANGN YSDAYNYSRD AILGGTYRIG AAKLFAAYEA ISAPDAVAGA PSKLKHGWLG VRYDVTPALT LIGAGYRVSA NRGNGNATLL MVGADYYLSK RTFLYASLGG VNNSSTANYA ADVTVNGPGA GASQRAVYFG MGHSF
|
| |