Gene Aaci_1087 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAaci_1087 
Symbol 
ID8424587 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAlicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 
KingdomBacteria 
Replicon accessionNC_013205 
Strand+ 
Start bp1147503 
End bp1148612 
Gene Length1110 bp 
Protein Length369 aa 
Translation table11 
GC content59% 
IMG OID645027204 
ProductDNA polymerase III, beta subunit 
Protein accessionYP_003184512 
Protein GI258511078 
COG category[L] Replication, recombination and repair 
COG ID[COG0592] DNA polymerase sliding clamp subunit (PCNA homolog) 
TIGRFAM ID[TIGR00663] DNA polymerase III, beta subunit 


Plasmid Coverage information

Num covering plasmid clones2 
Plasmid unclonability p-value0.00000722327 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGCTGTC TGATTGAGCA ATCTGTGTTG GAACCGACGC TGAGTGCGAT GGCACGTGTT 
GCACCCGTGC GTTCGTCTGC CGCAGTGTTG CAAGGCGTAC TGGTTGAGGC GGATCGTGGT 
CAGGTCACGT TCAGTGCCTA CGATTACGAT GTGGCGCTGC GCATGACCAT GGAAGCATCG 
GTGGTGGATC CGGGTGGCGT GGTGCTCCCG GCAAAGCTGT TCGCGGAGCT GGTTCGGCGG 
CTTCCCAAGG GCACGGTCGA CATTGCGACG ATCGCGCCGC ATCACCTGAG TGCGTCGATT 
GATGTTGACG CTACACATGC GGAGTTGCAT GGGTTTGACC CCGAGGAGTT TCCTGAGTTG 
CCCGATATGC GTGGCATTGC GCCTGTAGAA CTCTCGGCAA AAACCCTGGT GGCAGCCGTC 
GAGTCAGTCG GATACGCTGC GGCGAAGCGG GATCCGACGA GACCGATCCT TGAGGGTGTC 
CACGTCGCAT GCGACGACGG AAGGCTTGTT TGGACGGCCA CGAACGCGCT GCGCCTGGTG 
CAAGTGAAGC AGGCTGTCGA CGGTGAATTG CCGATTCGGT TCACGGTCCC ACGGCGCGGG 
CTCTCGGAAC TCCTGCGCTT GCTGGAGGAC GAGGAAGAAA CGACGGTGCA AGTTTACCAA 
AGTGCAAGCT ACGTGATGTT CGCCTGGGAT CATGTCCAGT TGTACACAAG GCTCTATCAG 
GGCGGGTATC CAGATGTGAC GCGGGTGATT CCGACGGAGT TTATCGCGGA GTGCAGGGTA 
GAACGCGATC GACTTGAGCA GGCGGTTGAA CGTACGACAA TTCTGGCGGA AAACGAGCAC 
CATTCGGTGA CGCTGGAGTT GTCGAATGGT GCGCTATGCA TGTCGTCGCG AGCGAGAGAC 
CGAGGCCAGG CGCGCGAAGA GGTGCCGATT CTCGAAAGTT CTGGCGAAGA AGTTCGGGTG 
GCGCTCAATG CGCGATTCGT CCTGGAGATG TTGCGAGCAA TGGAAGGACA GGTGGTGCGG 
ATACGGTTTG CTGGACGGGG GCGGCCTGTG TGCTTCCATG ACGATGATGA CCATCTGCAT 
CTGATCTCTA CGGTGTTGAC CCGCGACTGA
 
Protein sequence
MRCLIEQSVL EPTLSAMARV APVRSSAAVL QGVLVEADRG QVTFSAYDYD VALRMTMEAS 
VVDPGGVVLP AKLFAELVRR LPKGTVDIAT IAPHHLSASI DVDATHAELH GFDPEEFPEL 
PDMRGIAPVE LSAKTLVAAV ESVGYAAAKR DPTRPILEGV HVACDDGRLV WTATNALRLV 
QVKQAVDGEL PIRFTVPRRG LSELLRLLED EEETTVQVYQ SASYVMFAWD HVQLYTRLYQ 
GGYPDVTRVI PTEFIAECRV ERDRLEQAVE RTTILAENEH HSVTLELSNG ALCMSSRARD 
RGQAREEVPI LESSGEEVRV ALNARFVLEM LRAMEGQVVR IRFAGRGRPV CFHDDDDHLH 
LISTVLTRD