Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | AFE_3299 |
Symbol | hemD |
ID | 7135671 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
Kingdom | Bacteria |
Replicon accession | NC_011761 |
Strand | - |
Start bp | 2973994 |
End bp | 2974782 |
Gene Length | 789 bp |
Protein Length | 262 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 643531642 |
Product | uroporphyrinogen-III synthase |
Protein accession | YP_002427652 |
Protein GI | 218666649 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG1587] Uroporphyrinogen-III synthase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.466839 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACAGCA CCATACTGCG CGGCAAGGGC ATCGTGGTTA CCCGGCCGCG CGCGCAGACC GGCGAGATGC TGACCCTGTT GGAGGCGCAA GGCGCGCGCC CCATACTGTT TCCCGCCGTA GAGATCGAGG CGCCGGAGAA CTGGCAATCC CTGGATGACG CCTTGCATCG GCTTGTGACG TATGACTGGG TGATTTTTTC CAGCCGTAAT GCGGTCGCCT TCGCCCTCAG TCGCCTGCAG AGCCGCAACC TGTCCTGGCC GGTGGGGCCG CGCATTGCGG CGGTGGGACG GGAGACCGCC AAGGCGTTGG GTGAGTTTGG TCTGCAGGTC GACCTGGTCC CCCGGCGTTT CAGCTCCGAG GGTTTGCTGG AAAGTCCCGA ACTGCTGGAC GTGCGTGGGC AGCGCATCGC GCTGTTTGCC GGTGATCAGG GCCGGGAGCT GCTGGAGAAG ACCCTGGATG AGCGGGGAGC CGTCACCGAC GAGGTGCTCT GCTACCGGCG CCGGTTGCCC GGCACCAACC CGACGCCGTT GCTGCATGCC TGGGCGCGCG GCGAGCTGGA TGCGGTCACC GTGACCAGCC CGGAGATCTT CAATAATTTC TATCAGATGG TGGGGGGACT GGGACAACGC TGGTTGAAAA ACACGCCCAT CATCGCCATC AGCCCCCTCA CCGCCGAGGC CGTCACCGCG GTCGGTCTGC CCACCCCCTG GATCGCCCCG GAAGCCAGTA CGGCTGGCAT GCTGGCGGCG CTGACGGTAT GGGCGCAAGG CCTGGCGCCT CACACATGA
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Protein sequence | MNSTILRGKG IVVTRPRAQT GEMLTLLEAQ GARPILFPAV EIEAPENWQS LDDALHRLVT YDWVIFSSRN AVAFALSRLQ SRNLSWPVGP RIAAVGRETA KALGEFGLQV DLVPRRFSSE GLLESPELLD VRGQRIALFA GDQGRELLEK TLDERGAVTD EVLCYRRRLP GTNPTPLLHA WARGELDAVT VTSPEIFNNF YQMVGGLGQR WLKNTPIIAI SPLTAEAVTA VGLPTPWIAP EASTAGMLAA LTVWAQGLAP HT
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