| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | A2cp1_1603 |
|---|
| Symbol | |
|---|
| ID | 7296217 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anaeromyxobacter dehalogenans 2CP-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011891 |
|---|
| Strand | - |
|---|
| Start bp | 1791322 |
|---|
| End bp | 1793904 |
|---|
| Gene Length | 2583 bp |
|---|
| Protein Length | 860 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 77% |
|---|
| IMG OID | 643594399 |
|---|
| Product | TonB family protein |
|---|
| Protein accession | YP_002492013 |
|---|
| Protein GI | 220916709 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | [TIGR01352] TonB family C-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.00363915 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCCGCC TCCTCACGCT CGCCGTCGCG CTCGTCGCGG CGGCGCCTCC CCTCGCTCGC
GCCGGCGAGG GCGAGGGCGC CCTGACCCGC GCACCGGAGC TCCTCCAGGC GGTCGAGCCG
GACTACCCGG AGGCCGCCCG GGCCGCCGGC GTCACCGGCG TGGTCGCGCT CGAGCTGGAG
CTCTCCGACG CGGGCGAGGT GGTCTCGGCC GAAGTGACCG AGTCCGCCGA CCACGGCCTC
GACGAGGCGG CGCTCGCCGC CGCGCGCCGG CTCCGCTTCA CGCCCGCCGA GATCGACGGG
AAGCCTGCGG CGGTGCGCAT CGCCTACCGC TTCGAGTTCC GGCTCGCCGC GCCCGCCGAG
GATGCACCCG CGCCGCCCGA GCTTCGCGGG CGGGTGCTGG AGCGCGGCAC CCGCCTGCCC
GTGGCCGGCG CGCTGGTGCG GGCCGAGCCG GCCGCCGGCG AGGGGCGCTC GACCTACACC
GACCGTGACG GGCGCTTCGC GCTCGCCGGG GTCCCGGCCG GCCCGGTGGC GGTCACCGTC
GAGGACGGCG CGCACCGGCC GCTCCGCTCG ATGGAGGAGG TCCGCGCGGG CGAGGCGCTG
GAGGCGACGT ACTGGGTGGC GCGGGCGGCC GGCCCGGGCG AGTACGAGGC GGTGGTGGTC
GGGGAGCGGG AGGCGCGCGA GGTCTCGCGG GTGGCGCTCT CCGCCGGCGA GGTGCGCCGC
GTACCCGGCG CCTCCGGCGA CGCGGTGAAG GTGCTGCAGA ACCTGCCCGG CGTGGCGCGG
CCGCCCGGCC CCTCCGGCCA GCTCGTGGTC CGCGGCGGCA ACCCGCGCGA CACCCGCGTC
TACGTGGACG GCCAGCGGGT GCCGCAGGTC TTCCACTTCG GTGGCCTGAC CAGCGTCTAC
GCCTCGGACC TGCTCCAGGA CGTGGAGTTC GAGCCCGGCA ACTTCGGCGT GCGCACCGGA
CGCGCCATCG GCGGCCGGGT GAACCTGGTC ACCCGCGATC CGGGGGAGCG CAGCCACGCG
CTCGCCGACG TGAACCTGTA CCACGCCACC GCGCTCGTCG AGGGGACGAC GGCGGCCGGG
GTGGGCGTGG CGCTCGCCGC CCGGCGCTCC TACGCCGACG CGATCCTGAC CCGCGCCGCC
GAGCAGGCCG ACGACGGCCC CGGGATGCGC GTGGCGCCGC GCTACTACGA CCTGCAGGCC
AAGGCCGCCT GGCGCCCCGG CCCGGACGAC ACGGTCCGCC TCGACGTGTT CGGATCGGAC
GATCGGATGG TCCTCACCGG CGTGGCGCGG GAGGAGCTCC GCGACGTGGC GCTGCTCGAG
TACGGGACCC GCTTCTCGGT CGCCACGCTG CGCTGGGCGC ACCGCGCCAG CGAGGCGACG
CGGGTCGAGG TCTCGGCGGG CGGCGACTGG CAGGACGCGA CCATCCGGGC CGGCGACGCG
TACCAGGAGC GGTCCCGGGT CTTCACCGGC AGCGTGCGCA GCGAGGTCCG CCACGCCGCC
GCGCCCTGGC TCGACCTCGC CGCGGGCGTG GACGGCGGCT GGGCGCCGTC GGCGCGCGTC
GAGGTGACCG CCGCGCCGTT CCCGCCGCCG GGCCAGGTGC CCTCGCCGCA GGAGCCGCCG
CGGCGATACC GCGCGCGGAT CGAGGGCGCC GAGGGCGGCG CGTTCCTGGA GGCGACCTGG
AAGCCGGCGG CGGGCGTGGC GATCGTCCCC GGGATCCGCG CCGACGCGGA GCGGCTGCTG
GGCACGCGCA CCTGGGTGGA CCCGCGCGTC GCGGCGCGCT GGCAGCTGCG TGCCTCGACG
GCGCTCACCG CGGCCGCCGG CCTCTACCAC CAGTCGCCGC CGCTCGCCTA CCTCACCGAG
GAGTGGGGCA ACCCGGCGCT CCGGCCGGAG GGCGCCTGGC AGTACTCGGC CGGCGTGGAG
CAGCGCCTCC TCCCGCGACT CACCGTGGGC GTGCAGCTCT TCGCGAAGCG CCTGTTCGAC
CTGGCGCTCC CGTCGGACGC CACGGTGGTC CGCGACGGCG TCGAGGTGCC GGAGCGCTTC
TCCAGCCGCG GCACCGGCCG CGCGCGCGGC GCGGAGCTGC TGCTCCGCTG GGAGCCCGGG
GGCCGCTTCA TGGGCTGGCT CGCCACGTCG TGGTCGCGCA CGCGGCGCGG GCAGGCGGTG
GGCGGGGAGC GGCTCGAGGA CGAGGGCGAC GCCTACGACC AGCCGCTCAA CCTCGTGGCG
GTGGGGAGCT GGGAGCTCCC GGAGCTGTGG GACGGCCTGT CCGCCGGCTT CCGCCTGCGC
GCGGGCAGCG GCAATCCCTA CGAGCCCGTC CGCGCCGCCG TGTACGACGC CGACGCGGAC
GCGTACCGCC CGCTCGAGAC CGGGCGCCGG TCGGCGCGGA TGCCGGCGTT CTTCCAGCTC
GACGTCCGCG CCGACAAGAA GTGGACCTAC CGCACCTGGA CGTTCGCCGC CTACCTCGAG
ATCCAGAACG CGACCGCGCG GGAGAACGCC GAGGCGGTCG CCTGGAACCA CGACTACACG
CGCCGGGGCT GGGTGACCGG CCTTCCCTTC TTCCCCGCGT TCGGCCTGCG CGCCGAGTAC
TGA
|
|---|
| Protein sequence | MIRLLTLAVA LVAAAPPLAR AGEGEGALTR APELLQAVEP DYPEAARAAG VTGVVALELE
LSDAGEVVSA EVTESADHGL DEAALAAARR LRFTPAEIDG KPAAVRIAYR FEFRLAAPAE
DAPAPPELRG RVLERGTRLP VAGALVRAEP AAGEGRSTYT DRDGRFALAG VPAGPVAVTV
EDGAHRPLRS MEEVRAGEAL EATYWVARAA GPGEYEAVVV GEREAREVSR VALSAGEVRR
VPGASGDAVK VLQNLPGVAR PPGPSGQLVV RGGNPRDTRV YVDGQRVPQV FHFGGLTSVY
ASDLLQDVEF EPGNFGVRTG RAIGGRVNLV TRDPGERSHA LADVNLYHAT ALVEGTTAAG
VGVALAARRS YADAILTRAA EQADDGPGMR VAPRYYDLQA KAAWRPGPDD TVRLDVFGSD
DRMVLTGVAR EELRDVALLE YGTRFSVATL RWAHRASEAT RVEVSAGGDW QDATIRAGDA
YQERSRVFTG SVRSEVRHAA APWLDLAAGV DGGWAPSARV EVTAAPFPPP GQVPSPQEPP
RRYRARIEGA EGGAFLEATW KPAAGVAIVP GIRADAERLL GTRTWVDPRV AARWQLRAST
ALTAAAGLYH QSPPLAYLTE EWGNPALRPE GAWQYSAGVE QRLLPRLTVG VQLFAKRLFD
LALPSDATVV RDGVEVPERF SSRGTGRARG AELLLRWEPG GRFMGWLATS WSRTRRGQAV
GGERLEDEGD AYDQPLNLVA VGSWELPELW DGLSAGFRLR AGSGNPYEPV RAAVYDADAD
AYRPLETGRR SARMPAFFQL DVRADKKWTY RTWTFAAYLE IQNATARENA EAVAWNHDYT
RRGWVTGLPF FPAFGLRAEY
|
|---|
| |