55 decreased-coverage genes were found for selected organism/s



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Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
Mchl_0038  CDS  NC_011757  39489  39758  -  270  hypothetical protein  YP_002418931  decreased coverage  0.00434628  normal  1  Methylobacterium chloromethanicum CM4  Bacteria 
 
 
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Mchl_0178  CDS  NC_011757  176134  176322  +  189  hypothetical protein  YP_002419052  decreased coverage  0.00797046  normal  1  Methylobacterium chloromethanicum CM4  Bacteria 
 
 
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Mchl_0675  CDS  NC_011757  666149  666496  -  348  putative DNA-binding protein  YP_002419525  normal  0.205405  decreased coverage  0.00947691  Methylobacterium chloromethanicum CM4  Bacteria 
 
 
-
 
Mchl_0681  CDS  NC_011757  673780  674448  +  669  protein of unknown function DUF1449  YP_002419531  normal  1  decreased coverage  0.00978896  Methylobacterium chloromethanicum CM4  Bacteria 
 
 
-
 
Mchl_0844  CDS  NC_011757  861494  861928  +  435  hypothetical protein  YP_002419690  normal  0.584342  decreased coverage  0.00416761  Methylobacterium chloromethanicum CM4  Bacteria 
 
 
-
 
Mchl_0845  CDS  NC_011757  861987  862376  -  390  hypothetical protein  YP_002419691  normal  0.567555  decreased coverage  0.00390469  Methylobacterium chloromethanicum CM4  Bacteria 
 
 
-
 
Mchl_0849  CDS  NC_011757  864080  865279  -  1200  hypothetical protein  YP_002419695  normal  1  decreased coverage  0.00517849  Methylobacterium chloromethanicum CM4  Bacteria 
 
 
-
 
Mchl_1263  CDS  NC_011757  1283193  1284023  +  831  hypothetical protein  YP_002420077  decreased coverage  0.00802611  normal  1  Methylobacterium chloromethanicum CM4  Bacteria 
 
 
-
 
Mchl_1312  CDS  NC_011757  1342832  1343848  -  1017  transcriptional regulator, AraC family  YP_002420124  decreased coverage  0.00374343  normal  1  Methylobacterium chloromethanicum CM4  Bacteria 
 
 
-
 
Mchl_1448  CDS  NC_011757  1502337  1503350  -  1014  inner-membrane translocator  YP_002420253  decreased coverage  0.00412694  normal  1  Methylobacterium chloromethanicum CM4  Bacteria 
 
 
-
 
Mchl_1557  CDS  NC_011757  1610934  1611686  -  753  transcriptional regulator, Crp/Fnr family  YP_002420350  decreased coverage  0.00717235  normal  1  Methylobacterium chloromethanicum CM4  Bacteria 
 
 
-
 
Mchl_1685  CDS  NC_011757  1739028  1739705  -  678  two component transcriptional regulator, winged helix family  YP_002420476  decreased coverage  0.00118059  normal  1  Methylobacterium chloromethanicum CM4  Bacteria 
 
 
-
 
Mchl_1714  CDS  NC_011757  1762746  1766177  -  3432  cobaltochelatase subunit CobN  YP_002420505  normal  0.185329  decreased coverage  0.00608846  Methylobacterium chloromethanicum CM4  Bacteria 
 
 
-
 
Mchl_1715  CDS  NC_011757  1766191  1767087  -  897  hypothetical protein  YP_002420506  normal  0.285498  decreased coverage  0.00427271  Methylobacterium chloromethanicum CM4  Bacteria 
 
 
-
 
Mchl_1716  CDS  NC_011757  1767084  1768118  -  1035  cobalamin biosynthesis protein CobW  YP_002420507  normal  0.0702556  decreased coverage  0.00438103  Methylobacterium chloromethanicum CM4  Bacteria 
 
 
-
 
Mchl_1722  CDS  NC_011757  1770813  1771343  +  531  Adenosylcobinamide-phosphate guanylyltransferase  YP_002420513  normal  0.234816  decreased coverage  0.00410545  Methylobacterium chloromethanicum CM4  Bacteria 
 
 
-
 
Mchl_1723  CDS  NC_011757  1771343  1771945  +  603  cob(I)alamin adenosyltransferase  YP_002420514  normal  0.43296  decreased coverage  0.00431587  Methylobacterium chloromethanicum CM4  Bacteria 
 
 
-
 
Mchl_1724  CDS  NC_011757  1772512  1774053  +  1542  fumarate hydratase  YP_002420515  normal  0.90897  decreased coverage  0.00664146  Methylobacterium chloromethanicum CM4  Bacteria 
 
 
-
 
Mchl_1922  CDS  NC_011757  1983476  1984753  -  1278  radical SAM enzyme, Cfr family  YP_002420713  normal  1  decreased coverage  0.0056484  Methylobacterium chloromethanicum CM4  Bacteria 
 
 
-
 
Mchl_1933  CDS  NC_011757  1999881  2000510  -  630  Sarcosine oxidase gamma subunit  YP_002420724  decreased coverage  0.00979813  normal  1  Methylobacterium chloromethanicum CM4  Bacteria 
 
 
-
 
Mchl_2011  CDS  NC_011757  2107090  2107497  -  408  hypothetical protein  YP_002420786  decreased coverage  0.0066698  normal  1  Methylobacterium chloromethanicum CM4  Bacteria 
 
 
-
 
Mchl_2058  CDS  NC_011757  2156505  2157146  -  642  transcriptional regulator, TetR family  YP_002420833  decreased coverage  0.00904468  normal  0.0313266  Methylobacterium chloromethanicum CM4  Bacteria 
 
 
-
 
Mchl_2083  CDS  NC_011757  2183618  2184748  +  1131  diguanylate phosphodiesterase  YP_002420858  normal  1  decreased coverage  0.000567834  Methylobacterium chloromethanicum CM4  Bacteria 
 
 
-
 
Mchl_2084  CDS  NC_011757  2184764  2186017  +  1254  diguanylate cyclase  YP_002420859  normal  1  decreased coverage  0.000571313  Methylobacterium chloromethanicum CM4  Bacteria 
 
 
-
 
Mchl_2103  CDS  NC_011757  2201060  2201770  +  711  hypothetical protein  YP_002420878  decreased coverage  0.00149204  normal  0.726583  Methylobacterium chloromethanicum CM4  Bacteria 
 
 
-
 
Mchl_2156  CDS  NC_011757  2255289  2255996  -  708  two component transcriptional regulator, winged helix family  YP_002420931  decreased coverage  0.00956512  normal  0.0958311  Methylobacterium chloromethanicum CM4  Bacteria 
 
 
-
 
Mchl_2247  CDS  NC_011757  2362056  2363306  -  1251  Na+ dependent nucleoside transporter domain protein  YP_002421022  decreased coverage  0.00577659  normal  1  Methylobacterium chloromethanicum CM4  Bacteria 
 
 
-
 
Mchl_2248  CDS  NC_011757  2363416  2364078  -  663  hypothetical protein  YP_002421023  decreased coverage  0.00723109  normal  1  Methylobacterium chloromethanicum CM4  Bacteria 
 
 
-
 
Mchl_2295  CDS  NC_011757  2411539  2412165  -  627  protein of unknown function DUF477  YP_002421069  normal  1  decreased coverage  0.00345747  Methylobacterium chloromethanicum CM4  Bacteria 
 
 
-
 
Mchl_2296  CDS  NC_011757  2412155  2412940  -  786  protein of unknown function DUF477  YP_002421070  normal  1  decreased coverage  0.00760531  Methylobacterium chloromethanicum CM4  Bacteria 
 
 
-
 
Mchl_2316    NC_011757  2436619  2437178  -  560      decreased coverage  0.00777053  normal  0.182733  Methylobacterium chloromethanicum CM4  Bacteria 
 
 
-
 
Mchl_2564  CDS  NC_011757  2696330  2696827  -  498  rRNA large subunit methyltransferase  YP_002421334  normal  1  decreased coverage  0.00528144  Methylobacterium chloromethanicum CM4  Bacteria 
 
 
-
 
Mchl_2672  CDS  NC_011757  2807933  2808823  +  891  glucose-1-phosphate thymidylyltransferase  YP_002421440  decreased coverage  0.00250825  normal  1  Methylobacterium chloromethanicum CM4  Bacteria 
 
 
-
 
Mchl_2939  CDS  NC_011757  3096265  3099639  +  3375  alpha amylase catalytic region  YP_002421706  normal  1  decreased coverage  0.000998182  Methylobacterium chloromethanicum CM4  Bacteria 
 
 
-
 
Mchl_3023  CDS  NC_011757  3192466  3193110  +  645  ErfK/YbiS/YcfS/YnhG family protein  YP_002421789  decreased coverage  0.00777053  normal  0.339815  Methylobacterium chloromethanicum CM4  Bacteria 
 
 
-
 
Mchl_3171  CDS  NC_011757  3348843  3349049  -  207  hypothetical protein  YP_002421937  decreased coverage  0.00924455  normal  0.507561  Methylobacterium chloromethanicum CM4  Bacteria 
 
 
-
 
Mchl_3707  CDS  NC_011757  3910744  3911775  +  1032  Beta-N-acetylhexosaminidase  YP_002422454  decreased coverage  0.00367643  normal  0.692515  Methylobacterium chloromethanicum CM4  Bacteria 
 
 
-
 
Mchl_3713  CDS  NC_011757  3916171  3916740  +  570  NADPH-dependent FMN reductase  YP_002422460  normal  1  decreased coverage  0.0095822  Methylobacterium chloromethanicum CM4  Bacteria 
 
 
-
 
Mchl_3716  CDS  NC_011757  3918622  3919413  +  792  ABC transporter related  YP_002422463  normal  1  decreased coverage  0.00980305  Methylobacterium chloromethanicum CM4  Bacteria 
 
 
-
 
Mchl_3803  CDS  NC_011757  4016963  4017724  +  762  ABC transporter related  YP_002422550  decreased coverage  0.00979813  normal  1  Methylobacterium chloromethanicum CM4  Bacteria 
 
 
-
 
Mchl_3950  CDS  NC_011757  4148592  4149932  +  1341  phosphate-selective porin O and P  YP_002422689  decreased coverage  0.00821773  normal  0.355565  Methylobacterium chloromethanicum CM4  Bacteria 
 
 
-
 
Mchl_4151  CDS  NC_011757  4378203  4379252  +  1050  periplasmic binding protein  YP_002422873  decreased coverage  0.00557597  normal  1  Methylobacterium chloromethanicum CM4  Bacteria 
 
 
-
 
Mchl_4173  CDS  NC_011757  4399666  4400025  +  360  putative transcriptional regulator, ArsR family  YP_002422895  decreased coverage  0.00372298  normal  0.543364  Methylobacterium chloromethanicum CM4  Bacteria 
 
 
-
 
Mchl_4215  CDS  NC_011757  4442985  4443761  +  777  transcriptional regulator, IclR family  YP_002422936  decreased coverage  0.0022938  normal  1  Methylobacterium chloromethanicum CM4  Bacteria 
 
 
-
 
Mchl_4216  CDS  NC_011757  4443797  4444966  +  1170  acetate kinase  YP_002422937  decreased coverage  0.00713648  normal  1  Methylobacterium chloromethanicum CM4  Bacteria 
 
 
-
 
Mchl_4243  CDS  NC_011757  4468064  4469326  -  1263  hypothetical protein  YP_002422950  decreased coverage  0.00676877  normal  0.0655667  Methylobacterium chloromethanicum CM4  Bacteria 
 
 
-
 
Mchl_4273  CDS  NC_011757  4510674  4511300  +  627  Nicotinamidase  YP_002422977  decreased coverage  0.00705625  normal  1  Methylobacterium chloromethanicum CM4  Bacteria 
 
 
-
 
Mchl_4867  CDS  NC_011757  5181236  5181709  +  474  NADH dehydrogenase (ubiquinone) 24 kDa subunit  YP_002423560  normal  1  decreased coverage  0.00194122  Methylobacterium chloromethanicum CM4  Bacteria 
 
 
-
 
Mchl_4868  CDS  NC_011757  5181706  5183265  +  1560  NADH dehydrogenase (quinone)  YP_002423561  normal  1  decreased coverage  0.00138717  Methylobacterium chloromethanicum CM4  Bacteria 
 
 
-
 
Mchl_4978  CDS  NC_011757  5320604  5321563  -  960  transcriptional regulator, LysR family  YP_002423671  decreased coverage  0.00475669  normal  0.0695462  Methylobacterium chloromethanicum CM4  Bacteria 
 
 
-
 
Mchl_5375  CDS  NC_011757  5765018  5765281  +  264  hypothetical protein  YP_002424061  decreased coverage  0.00434628  normal  0.527064  Methylobacterium chloromethanicum CM4  Bacteria 
 
 
-
 
Mchl_5376  CDS  NC_011757  5765382  5765702  -  321  hypothetical protein  YP_002424062  decreased coverage  0.000800704  normal  0.539104  Methylobacterium chloromethanicum CM4  Bacteria 
 
 
-
 
Mchl_5544  CDS  NC_011758  168076  169326  -  1251  glycosyl transferase family 28  YP_002424208  normal  1  decreased coverage  0.00888029  Methylobacterium chloromethanicum CM4  Bacteria 
 
 
-
 
Mchl_5545  CDS  NC_011758  169323  170636  -  1314  hypothetical protein  YP_002424209  normal  1  decreased coverage  0.005595  Methylobacterium chloromethanicum CM4  Bacteria 
 
 
-
 
Mchl_5593  CDS  NC_011758  218838  219308  -  471  hypothetical protein  YP_002424253  normal  0.0332583  decreased coverage  0.00567651  Methylobacterium chloromethanicum CM4  Bacteria 
 
 
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