Statistics

PanDaTox organisms
Distribution of gene clonability in plasmid clones
GC content of genes that inhibit E. coli growth when cloned into it using plasmid vectors
Functions of genes that inhibit E. coli growth when cloned into it using plasmid vectors
Families of genes that inhibit E. coli growth when cloned into it using plasmid vectors



PanDaTox organisms


The PanDaTox database contains a total of 393 organism, distributed by kingdoms as shown below:



For viewing the organism processed for PanDaTox, please visit our Browse page.


Distribution of gene clonability in plasmid clones


The PanDaTox database contains a total of 1,566,994 genes, distributed according to gene clonability in plasmids as shown below:



For information on categorization of gene clonability, please see our FAQ page.



GC content of genes that inhibit E. coli growth when cloned into it using plasmid vectors




Analysis of 1,566,994 genes from 393 organisms that were cloned into E. coli during the process of WGS sequencing was performed.
15,927 of those genes were found to be unclonable when transferred into E. coli via plasmid vectors.
Green columns represent the fraction of all 1,566,994 genes with a certain GC content.
Adjacent red columns represent the fraction of the 15,927 unclonable genes with the same GC content.
Columns enclosed in a grey box represent GC content for which significant enrichment of unclonable genes was found
(P < 0.01 according to a hypergeometric probability test corrected for multiple hypothesis testing).



Functions of genes that inhibit E. coli growth when cloned into it using plasmid vectors




Analysis of 1,566,994 genes from 393 organisms that were cloned into E. coli during the process of WGS sequencing was performed.
15,927 of those genes were found to be unclonable when transferred into E. coli via plasmid vectors.
Grey columns represent the fraction of all 1,566,994 genes that belong to a given COG category.
Adjacent purple columns represent the fraction of the 15,927 unclonable genes that belong to the same COG category.
Columns enclosed in a green box represent COG categories for which significant enrichment of unclonable genes was found
(P < 0.01 according to a hypergeometric probability test corrected for multiple hypothesis testing).



Families of genes that inhibit E. coli growth when cloned into it using plasmid vectors




Analysis of 1,566,994 genes from 393 organisms that were cloned into E. coli during the process of WGS sequencing was performed.
15,927 of those genes were found to be unclonable when transferred into E. coli via plasmid vectors.
Orange columns represent the fraction, out of all 1,566,994 genes, that belong to a given gene family.
Adjacent blue columns represent the fraction of the 15,927 unclonable genes that belong to the same gene family.
This graph displays the 30 gene families for which the most significant enrichment of unclonable genes was found
(P < 0.01 according to a hypergeometric probability test corrected for multiple hypothesis testing).