Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YpsIP31758_A0024 |
Symbol | |
ID | 5384079 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis IP 31758 |
Kingdom | Bacteria |
Replicon accession | NC_009704 |
Strand | - |
Start bp | 44942 |
End bp | 45466 |
Gene Length | 525 bp |
Protein Length | 174 aa |
Translation table | 11 |
GC content | 34% |
IMG OID | 640857096 |
Product | conjugal transfer peptidase TraF |
Protein accession | YP_001393285 |
Protein GI | 153930620 |
COG category | [O] Posttranslational modification, protein turnover, chaperones [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4959] Type IV secretory pathway, protease TraF |
TIGRFAM ID | [TIGR02771] conjugative transfer signal peptidase TraF |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 47 |
Plasmid unclonability p-value | 0.0928495 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAAACAGT CACACTCGTT GGCTTTTGTA GTTAGCGGAA TAGCTTTGAT ATCTACAATT ATTTATATCT CTGGTATTCG AGTTAACACA AGTGAAAGTA TTCCCGTAGG ATTATATTTA ATGACACCGT CACCTATCTC TAAAGGAGAG TATGTTGTTT TTTGTCCTCC ACCGACAAGT GATTTTGATA AAGCTAGAAG TCGAGGTTAT ATCAACTCTG GTTTCTGCTC AGGTAACTAT GGTTATATGA TGAAGAGAAT TTTAGCCGCT AAAGGAGATG TTGTTTCTAT TAATAGTAAT GGTGTGATTG TTAATAATAT TAAAATACCC TATAGCAAGC CTCTCTCTGT TGATTTGTCA GGGAACCCAC TGCCTAGCAT TAATATACTC AATCATACAT TGCAAGAATC AGAGCTTCTT TTAATGACTG ACCAAAGTAA TAGTTCTTTT GATTCGCGAT ATTTCGGTTT TATTGATAAA CAACAAATAC ACAGTGTTAT TCGTCCAATA TTAAGTTGGA AGTAA
|
Protein sequence | MKQSHSLAFV VSGIALISTI IYISGIRVNT SESIPVGLYL MTPSPISKGE YVVFCPPPTS DFDKARSRGY INSGFCSGNY GYMMKRILAA KGDVVSINSN GVIVNNIKIP YSKPLSVDLS GNPLPSINIL NHTLQESELL LMTDQSNSSF DSRYFGFIDK QQIHSVIRPI LSWK
|
| |