| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | XfasM23_1776 |
|---|
| Symbol | |
|---|
| ID | 6203029 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xylella fastidiosa M23 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010577 |
|---|
| Strand | - |
|---|
| Start bp | 1968467 |
|---|
| End bp | 1970512 |
|---|
| Gene Length | 2046 bp |
|---|
| Protein Length | 681 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 641703287 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_001830453 |
|---|
| Protein GI | 182682293 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.506157 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTTGTCA CCCATATCAG TATTTTGCCC CGCACTGTTC TTTTTCTGGC TGTTTACAAT
TTACTCCTCA CTCCAGCGTT GGCTATGGCT GACGTTGGAC CGCCACCCAC AGATTCACGT
CATTTCAAAA CGACAGAAGT CACGCGCCAC CTCAAGGACC TGGACGCAGT GGTTGTTACT
GCTATTCCAT TACGTGATAG TTATAGTGAT TTGAGTCGCC CGGTTGCACT GTTGGCGGGC
GAGAGGTTGG ATGAAGTACG TGCTAGTAGT CTTGGTGAGA CTGTTGCCGT CTTGCCTGGT
GTGCAGAGCT CAAATTTTGG CCCTGGTGTG GGCCGCCCTA TCATTCGCGG GCTGGATGGT
CCGCGCATTG CTGTTCTCAA TAATGGTTTG TCCTCTCAGG ACGTGTCTAC GGTTAGCCAG
GATCATTCGC CAGCGGTCGA GCCATTTTTG GCTAATCAGA TTGAGGTGTT GAAAGGCCCG
TCCACTTTAC TATATGGTTC AGGAGCGATC GGTGGAGTAG TCAATATCGT TGATGGACGT
ATTGCTGAAG CGCCCGTAGG TGGTTTCAAC GGACGTGCTG AAATGCGTTT AGACGGTGGT
GATAAACATG GTAATAACAA CATGTTCCGC ATTGATGCTG GTAACGGGAG TGCTCTATCG
GTCCATGCAG ATGGCGTGTA CCGTAACGAA AAGGACTATG ACACCCCGAA GGGGCGGCAG
GTTAACTCGT TCATCGACAC CAAATCAGGC TCGATGGGTG CTTCGTTCAG CGGTGATTTT
GGTTTCTTTG GCCTGTCGGT CGCGCGTTTT CATGACAGCT ATGGCAATCC GGGTGAGCCT
GGTGATCCTA TCGCGGGTGA CCGCGGTAGT TGGTTGCTAT TGCATCAGGA TCGTTATGAT
TTGAAGGCTG GTTTAACTGA TCCATGGGGT GAGGCGAGTG CCCTGCGTTT CAGCCTAGGT
CACACTCAAT ATGATCACAT TGAGTTTGAG GGAAACGAGG TCGGCACTAC TTTCGGTAAG
CGTGCTTCAG AGGGGCGAGT CGAGGCCTCC TTTGCATTTG GTGGTGGCTG GCGGACTGCG
TTTGGTGTGC AGGGAGGGGA CTCTACTTTC CAGGCGCTTG GTGAGGAGTC ATTTGTACCA
AAGACGAATA ACAAATCAAT TGGTGTGTTC GGATTGGCAC ATAACACTTT TGGGTTGTTT
CAAGTAGAAT TTGGTGCGCG TGGTGATCAA GTTAAATACG ATACGGATAA TGGCGTTACT
CGGAATTATC ACCCAGGAAG TTTTTCATTT AGTGGTGATT TAGCACTCTC TAAGCAATGG
CGGCTGACTT TGAACGTGGA TCATGCCGAG CGTGCTCCGG TGGAGGAGGA ACTGTTTGCC
AAGGGGCCGC ACATTGCGAC TCTTGCTTAT GAAGTTGGTC GTGCCGACCT GAATAAGGAG
AAGGCTAACC AAGCTGAGTT GGGGTTGGTA TTCCGTAACG ATTGGAGTGA TGCCAAAGTT
TCGACCTATT ACAGTCGCTA TGGCAATTTC ATTTACTTAG TCGATACAGG GAGTACTTGG
TTTTGGGATG ATGGACAGCG TGATTTGCCG GTCCGTCAGT GGTCGCAAGC TAATGCAATT
TTTCACGGAA TTGAAGGTGA GGCCACCTTT CACTTGGCTA AAAATACGAG TGGGTCTTGG
GACCTACGTG TGTTTGGTGA CGGGGTTCGT GGTCGTTTGA AAGATGGAGG CAATTTGCCA
CGCATCGTTC CAGCACGTTA CGGGGCGGAG CTACGTTGGG AGGACGTTGG TTGGCGTACA
TCGTTGGGTG CTAAGCGCTA CGAGAAGCAG AACAGAGTAG CGGTCAACGA GACTCCAACC
ACAGGATATA CCATGGTAGA TGCGCATTTG GCCTACCATA TTGATGTGGA TAACATTGCC
TGGGAGGTCT TTTTCGATGG TAACAATCTC ACCAACTGCG ATGCTCGTGT TCATACTTCC
TTCCTTAAAG ACGATGTCAT GTTGGCTGGT CGTAACTATA CTGTTGGTTT GCGTATGTTC
TTTTAG
|
|---|
| Protein sequence | MLVTHISILP RTVLFLAVYN LLLTPALAMA DVGPPPTDSR HFKTTEVTRH LKDLDAVVVT
AIPLRDSYSD LSRPVALLAG ERLDEVRASS LGETVAVLPG VQSSNFGPGV GRPIIRGLDG
PRIAVLNNGL SSQDVSTVSQ DHSPAVEPFL ANQIEVLKGP STLLYGSGAI GGVVNIVDGR
IAEAPVGGFN GRAEMRLDGG DKHGNNNMFR IDAGNGSALS VHADGVYRNE KDYDTPKGRQ
VNSFIDTKSG SMGASFSGDF GFFGLSVARF HDSYGNPGEP GDPIAGDRGS WLLLHQDRYD
LKAGLTDPWG EASALRFSLG HTQYDHIEFE GNEVGTTFGK RASEGRVEAS FAFGGGWRTA
FGVQGGDSTF QALGEESFVP KTNNKSIGVF GLAHNTFGLF QVEFGARGDQ VKYDTDNGVT
RNYHPGSFSF SGDLALSKQW RLTLNVDHAE RAPVEEELFA KGPHIATLAY EVGRADLNKE
KANQAELGLV FRNDWSDAKV STYYSRYGNF IYLVDTGSTW FWDDGQRDLP VRQWSQANAI
FHGIEGEATF HLAKNTSGSW DLRVFGDGVR GRLKDGGNLP RIVPARYGAE LRWEDVGWRT
SLGAKRYEKQ NRVAVNETPT TGYTMVDAHL AYHIDVDNIA WEVFFDGNNL TNCDARVHTS
FLKDDVMLAG RNYTVGLRMF F
|
|---|
| |