| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Veis_3827 |
|---|
| Symbol | |
|---|
| ID | 4695138 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Verminephrobacter eiseniae EF01-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008786 |
|---|
| Strand | - |
|---|
| Start bp | 4227565 |
|---|
| End bp | 4228713 |
|---|
| Gene Length | 1149 bp |
|---|
| Protein Length | 382 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 639851576 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_998554 |
|---|
| Protein GI | 121610747 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4966] Tfp pilus assembly protein PilW |
|---|
| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.365962 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.196357 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCAAAC TGATCCGAGC GCAGCAGGGC CTGAGCATCA TCGAATTGCT GGTGGCGATG
ACCGTCAGCA TGGCGGTCGT GATCGCTGCT GCTTATACCT ATCTGTCCGT GCGCGAATCA
CAAAGAGCCA TCGACAGAAC CAGCAGCAGC CGCGAAACCG GCGCATTCGT AATGCAAATG
CTGGGGCGTG AAATCATGAT GGCAGGGTTT TATCCTGCCA CAGCGGCGAC ACCGAGGGAC
TTGACCGCCG AGATCAGCCA AAAAGGCATG TACGACACCT ATCCCCCGTT GCCATCCGAT
CCATCAGCCC CACCAGACAT TCGCGCTAGC GACTGGCCAC AAGGCCCCGC AGCATTCCAA
ACGGGTATTT TTGGCTGCGA TGCCGCCGAG TTCAATGTGC AAAACAGTAT CTGCGGCACA
CAAAGCGCTA ACGCTGCAGA TACCGTGGTC ATCAACTATT TCACCAGCGA CAGCCGTCTC
ATGGGGGGCG ATGCCAGCCG GCGCTTCGAC TGCACTGGCC GGGATGTGGC TTCGCCAGAG
GACGACCCGG AGTTCCCGGG GGGCGGCGAT TCCCGAAACG CCATACGCAA GAGAAACGCG
GACGCTGCGG GCAATCTGCG CAGGTCGGGG CCGGACACTC TTAAACCAGT GAAAACGAAT
AAAGCCGGCC CCCCGCAACT ACCCGTTTTC GTCTCGAATC GCTTTACGCT GAAGACTACC
AGAGTTGCAT TCGATCAATT TCAAAGAGAT ATCATGACCA AGAGCCTGGT GTGCAGCGGC
AATGGCAGCG CCCCCCCTGG AAATGTGGGC CTCGAGACAT ACCAACCCAT CGTGGCAGGA
CTGGAAGACC TGCAGTTTGC TTACGGCATC CATGACGGAA CGGGTATGAA GTTTTTTACG
GCAACAGAAA TTAGTAGCAA TGCCCCGCAG CGTTGGCAAA ATGTGATTGC GGTGCGCGTT
TGCCTGTTGA CACGCACCCT TGGCGGCAAT ACGCGCCTGC CAGGCGCAGC GGGCACGGCG
AGCGCAGCGG GTGCGGCAAG CACATACCGC GATTGCCACA ATGAAAAGAG AATCCAGCCC
GCCGGGGACA CCATTACCCG GTATGTTGAA GAATTCGGCC TGCGCAACAA TATGAAGCAG
CATTATTGA
|
|---|
| Protein sequence | MTKLIRAQQG LSIIELLVAM TVSMAVVIAA AYTYLSVRES QRAIDRTSSS RETGAFVMQM
LGREIMMAGF YPATAATPRD LTAEISQKGM YDTYPPLPSD PSAPPDIRAS DWPQGPAAFQ
TGIFGCDAAE FNVQNSICGT QSANAADTVV INYFTSDSRL MGGDASRRFD CTGRDVASPE
DDPEFPGGGD SRNAIRKRNA DAAGNLRRSG PDTLKPVKTN KAGPPQLPVF VSNRFTLKTT
RVAFDQFQRD IMTKSLVCSG NGSAPPGNVG LETYQPIVAG LEDLQFAYGI HDGTGMKFFT
ATEISSNAPQ RWQNVIAVRV CLLTRTLGGN TRLPGAAGTA SAAGAASTYR DCHNEKRIQP
AGDTITRYVE EFGLRNNMKQ HY
|
|---|
| |