13 homologs were found in PanDaTox collection
for query gene Vapar_R0019 on replicon NC_012791
Organism: Variovorax paradoxus S110



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_012791  Vapar_R0019  SRP RNA; RNA component of signal recognitionparti cle  100 
 
 		 102 bp  202  9.999999999999999e-51  Variovorax paradoxus S110  Bacteria  normal  1  n/a   
 
 
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NC_008782  Ajs_R0030  SRP RNA  93.68 
 
 		 101 bp  141  3.9999999999999997e-32  Acidovorax sp. JS42  Bacteria  normal  0.794672  normal  0.947694 
 
 
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NC_011992  Dtpsy_R0029  SRP RNA; RNA component of signal recognitionparti cle  93.68 
 
 		 101 bp  141  3.9999999999999997e-32  Acidovorax ebreus TPSY  Bacteria  normal  1  n/a   
 
 
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NC_008752  Aave_R0034  SRP RNA; RNA component of signal recognition particle  91.75 
 
 		 101 bp  129  1.0000000000000001e-28  Acidovorax citrulli AAC00-1  Bacteria  normal  0.052993  normal  0.0100088 
 
 
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NC_007908  Rfer_R0009  SRP RNA; RNA component of signal recognition particle  90.91 
 
 		 102 bp  125  2e-27  Rhodoferax ferrireducens T118  Bacteria  normal  1  n/a   
 
 
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NC_008786  Veis_R0002  SRP RNA  90.82 
 
 		 101 bp  115  2.0000000000000002e-24  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.467787  normal  1 
 
 
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NC_008781  Pnap_R0025  SRP RNA  89.47 
 
 		 102 bp  109  1e-22  Polaromonas naphthalenivorans CJ2  Bacteria  decreased coverage  0.00341222  normal  0.445968 
 
 
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NC_007948  Bpro_R0028  SRP RNA; RNA component of signal recognition particle  88.42 
 
 		 102 bp  101  3e-20  Polaromonas sp. JS666  Bacteria  normal  1  normal  1 
 
 
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NC_010002  Daci_R0075  SRP RNA; RNA component of signal recognition particle  93.65 
 
 		 101 bp  93.7  8e-18  Delftia acidovorans SPH-1  Bacteria  normal  0.643834  normal  1 
 
 
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NC_010524  Lcho_R0047  SRP RNA; RNA component of signal recognition particle  87.3 
 
 		 104 bp  61.9  0.00000003  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.20206 
 
 
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NC_007347  Reut_AR0024  SRP RNA; RNA component of signal recognition particle  84.48 
 
 		 105 bp  44.1  0.007  Ralstonia eutropha JMP134  Bacteria  normal  0.255506  n/a   
 
 
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NC_009080  BMA10247_3560  signal recognition particle RNA  84.48 
 
 		 102 bp  44.1  0.007  Burkholderia mallei NCTC 10247  Bacteria  normal  1  n/a   
 
 
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NC_012856  Rpic12D_R0020  SRP RNA; RNA component of signal recognitionparti cle  84.48 
 
 		 104 bp  44.1  0.007  Ralstonia pickettii 12D  Bacteria  normal  1  normal  0.330049 
 
 
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