Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_6298 |
Symbol | |
ID | 7975620 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012792 |
Strand | - |
Start bp | 1034588 |
End bp | 1035610 |
Gene Length | 1023 bp |
Protein Length | 340 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 644796868 |
Product | integrase family protein |
Protein accession | YP_002948127 |
Protein GI | 239820942 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG4974] Site-specific recombinase XerD |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCCGTCGC TTCCCCTCTT CTCCGAACCC TCCGGTGAAT CGCATCAGGC GGCGTTTGCC AGCTGGCTGG CCGCGCAGCA AGAAAACGGC GCCTTGCGGC AGCCCTCTTC CATCGCGGTC TATCGCGACA TGTGGGGCAG TTTCACGGCC TGGTGCCTCG GCCAGTCGCC CGCGGTGACG CTTGCGTCGC TGGACAAGGG CGACCTGTCG GCGTTCCAGC AGGCGCGCTT CGGCATGAAA AGCGACGACC TGTCGCTGTC GCCGCGCTAT GCGCTGCGCC TGCTTCGGCT GATCGACCGG GTGCTGCGCC ACCATGCACA GACGCACGAC GTTCCCGTCA ACACCGCCGC CGCGGACTGG ATCGCAACGC AGCCGGAGAT TCGCTATGCG GATTCGGTGC GGGCCGATCC GCTGCCGGAA TTCCTCTCGG TTTCCGAGGC CCGGCATCTC ATCGTCTTTC TCTCGAGCGC CCGGCCGCGT CCCGGCGCGG CAGGCGACCG GCATGCCCAG GCCGCGCTGA GCTGGCAGGC GCTGCGCAAC CGCACGGCCG TTGCCCTGCA GCTGGGCGCG GGGCTCACGC CCGGAGACGT CCGCCTGCTG CGGCTCGATG CGCCGACATC GCAGATGGCT GGCCGGCGCG ATCGGCCCTG GAAGGTTGCG GTGCCGGGCA ACGGCAATTC GCCGGCGCGC GAGGCACCGG TCGCTCCCTG GGCCGGCGAA CTGCTGCAGC ACTGGCTCAA GGTACGCGCC GAGCTGTTGA TCGCGGGCGA GTTCCTGTTC CCGGCCACGC GCAGCGGCAA GCCCTGGAGC AAGGAGGCGC AGTACGTTGC CGCCAAGCAG GTGCTGCAGG ATGCGGGCGT CGAGGCCGCC GGCGGCGGCT CCTTCCTGCT GCGCCACACC TTTGCGCTGC GCCAGTTGCG CAGGGGCGCC ACGCTCGATC AGGTGGCGCG CTGGCTCGGC GTGGAGCCCG AGGCGATGGG CAAGTACCAG CGCGTGCTCA CCGGGCCGGC CGAGATCGTC TGA
|
Protein sequence | MPSLPLFSEP SGESHQAAFA SWLAAQQENG ALRQPSSIAV YRDMWGSFTA WCLGQSPAVT LASLDKGDLS AFQQARFGMK SDDLSLSPRY ALRLLRLIDR VLRHHAQTHD VPVNTAAADW IATQPEIRYA DSVRADPLPE FLSVSEARHL IVFLSSARPR PGAAGDRHAQ AALSWQALRN RTAVALQLGA GLTPGDVRLL RLDAPTSQMA GRRDRPWKVA VPGNGNSPAR EAPVAPWAGE LLQHWLKVRA ELLIAGEFLF PATRSGKPWS KEAQYVAAKQ VLQDAGVEAA GGGSFLLRHT FALRQLRRGA TLDQVARWLG VEPEAMGKYQ RVLTGPAEIV
|
| |