Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_6295 |
Symbol | |
ID | 7975617 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012792 |
Strand | - |
Start bp | 1031799 |
End bp | 1033571 |
Gene Length | 1773 bp |
Protein Length | 590 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 644796865 |
Product | ATP-dependent DNA helicase, RecQ family |
Protein accession | YP_002948124 |
Protein GI | 239820939 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0514] Superfamily II DNA helicase |
TIGRFAM ID | [TIGR00614] ATP-dependent DNA helicase, RecQ family |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCAGAGC ACCACCAGAA GCCACCGCCG AAGAAAGCGA AGACGACGAC GCGGGCCGCC GTCCGCAAGC AACGCACCCG CGCCGCCTCT GAAGCACCCG TTGACCGCGT GCTGCACGAG GTGTTCGGCC ATCGGCGGCT GCGGCCCGGG CAGCGCCGCG TGATCGATCG CGTGGTCGGC GGCGAATCGA CGCTCGCCGT CATGCCCACG GGCGCCGGAA AATCGCTGTG CTACCAGGTG CCCGCGGTGC TCGCGCCGGG GCAGACGGTG GTGGTCTCGC CCCTGATCGC GCTCATGAAG GACCAGTGCG AGAAGCTGAA CGCGACGGGC GTGAGCGCCG TGCAGCTCAA CAGCCAGTGC ACCGCCCAGG AGATCGACGA CGCGCAGGCG GCCATCGCCG ACGGTTCGGC GCGCGTGATC TTCAGCACGC CGGAGCGCCT GGCCGACGCC GATTTCCTCG CGCTGCTCCA GCGGCACCCG ACCTCCTTGC TCGTGGTCGA CGAGGCGCAT TGCATCTCGC AGTGGGGGCA CGACTTCCGG CCCGCCTACC TGGAGCTGGG TGCGGCGGTG CGCGCGCTGA ACCATCCGGT GGTGCTGGCG CTCACGGCCA CGGCAAACGG CGAAGTGGCC GGGGAGATCA TGGAGAAGCT CGGCATTCCG CGCGCCGGCC TCGTCGACAC CGGCGCGTAC CGGCCCAACC TGCACTACGC GGTCGAGCCG GCGATGCGCG AGGAAGACAA GCTGCGGCGC GCGCTCGCGC TGGTGGCGGG CCTCAAGGGC AGCGGCATCG TCTACACCGC CACGGTGAAG GCGGCCGAGG CGTTCTTCGC CGAACTGGCG GCCGCCGGCG AGTCCGCGGG CCTGTACCAC GGCCGGCGGC GCGCCGGCGA ACGGCGCGCT GCACAGGACG CGTTCATGGC GGGCAAGCTG CGCGTGATGG TGGCCACCAA TGCCTTCGGC ATGGGGGTCG ACAAACCGGA CATCCGCTTC GTGCTGCACT ACCAGATGCC CTCCAGCCTC GATGCCTACT ACCAGGAGTC GGGCCGCGCC GGCCGCGATG GCGAGCGCGC CGACTGCATT CTTCTGTACC TGCGGCGCGA CCGCGCCGTG CAGCAGTTCT TCCTGGCCGG CTGGCTGCCC GAGCTGGCCG AGCTGCGTGC GCTGCAGCAG CAGCTGCTGC CGATGCCGAA CGCAGCCGCG GCGCCGGGCT GGAGCGAGGC GCAGCTCCAG CAGCGCGCAC GCCTGCCGCG CGGCAAGCTT CGCGTGCTGC TGAGCCTGCT GCGGCAGGAA GACCTGGTGG CGCGCGACCG CGAGGGACGG CTGCACTGGC GCGGGAAGCC GCCGCTCGAA GACGCCGAAC TCGATGCGCT TCTGGACGAA CACCGCGAGA AGCGCGAGCA GGACCGCGAG GCGCTGGAAC GCATGACCTT CTATGCGACG ACCGGCCTGT GCCGCTGGCA GGTGCTTCTG TCGGGCCTTG GAAGCGATGC GCTCGCGCAG CGCTGCGGCG CCTGCGACAA CTGCGTGCGG CTGGCCCGCC ACGAGCGCGA GCGCCGTGCG GCTGCGCGAG ACGCGGCAGC AAAGGAAGAA GCAGACCCGC CGCAGCACGC CGCCGCTTTT GCCCGGGGAG CGTCGGTGCG CGTGCCGCGC TATGGGGTCG GATGCGTCAC GGCCGCCGAT GCGGTCTCCG TGACGATCGA ATTTCCCGAC GGCAGCCAGC GCTGCTTCCG GCCCGAGTTC GTGCGCCTGG TGCCCGCGCT TCGCCGGGCC TGA
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Protein sequence | MPEHHQKPPP KKAKTTTRAA VRKQRTRAAS EAPVDRVLHE VFGHRRLRPG QRRVIDRVVG GESTLAVMPT GAGKSLCYQV PAVLAPGQTV VVSPLIALMK DQCEKLNATG VSAVQLNSQC TAQEIDDAQA AIADGSARVI FSTPERLADA DFLALLQRHP TSLLVVDEAH CISQWGHDFR PAYLELGAAV RALNHPVVLA LTATANGEVA GEIMEKLGIP RAGLVDTGAY RPNLHYAVEP AMREEDKLRR ALALVAGLKG SGIVYTATVK AAEAFFAELA AAGESAGLYH GRRRAGERRA AQDAFMAGKL RVMVATNAFG MGVDKPDIRF VLHYQMPSSL DAYYQESGRA GRDGERADCI LLYLRRDRAV QQFFLAGWLP ELAELRALQQ QLLPMPNAAA APGWSEAQLQ QRARLPRGKL RVLLSLLRQE DLVARDREGR LHWRGKPPLE DAELDALLDE HREKREQDRE ALERMTFYAT TGLCRWQVLL SGLGSDALAQ RCGACDNCVR LARHERERRA AARDAAAKEE ADPPQHAAAF ARGASVRVPR YGVGCVTAAD AVSVTIEFPD GSQRCFRPEF VRLVPALRRA
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