| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6295 |
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| Symbol | |
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| ID | 7975617 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 1031799 |
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| End bp | 1033571 |
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| Gene Length | 1773 bp |
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| Protein Length | 590 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644796865 |
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| Product | ATP-dependent DNA helicase, RecQ family |
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| Protein accession | YP_002948124 |
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| Protein GI | 239820939 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0514] Superfamily II DNA helicase |
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| TIGRFAM ID | [TIGR00614] ATP-dependent DNA helicase, RecQ family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCAGAGC ACCACCAGAA GCCACCGCCG AAGAAAGCGA AGACGACGAC GCGGGCCGCC
GTCCGCAAGC AACGCACCCG CGCCGCCTCT GAAGCACCCG TTGACCGCGT GCTGCACGAG
GTGTTCGGCC ATCGGCGGCT GCGGCCCGGG CAGCGCCGCG TGATCGATCG CGTGGTCGGC
GGCGAATCGA CGCTCGCCGT CATGCCCACG GGCGCCGGAA AATCGCTGTG CTACCAGGTG
CCCGCGGTGC TCGCGCCGGG GCAGACGGTG GTGGTCTCGC CCCTGATCGC GCTCATGAAG
GACCAGTGCG AGAAGCTGAA CGCGACGGGC GTGAGCGCCG TGCAGCTCAA CAGCCAGTGC
ACCGCCCAGG AGATCGACGA CGCGCAGGCG GCCATCGCCG ACGGTTCGGC GCGCGTGATC
TTCAGCACGC CGGAGCGCCT GGCCGACGCC GATTTCCTCG CGCTGCTCCA GCGGCACCCG
ACCTCCTTGC TCGTGGTCGA CGAGGCGCAT TGCATCTCGC AGTGGGGGCA CGACTTCCGG
CCCGCCTACC TGGAGCTGGG TGCGGCGGTG CGCGCGCTGA ACCATCCGGT GGTGCTGGCG
CTCACGGCCA CGGCAAACGG CGAAGTGGCC GGGGAGATCA TGGAGAAGCT CGGCATTCCG
CGCGCCGGCC TCGTCGACAC CGGCGCGTAC CGGCCCAACC TGCACTACGC GGTCGAGCCG
GCGATGCGCG AGGAAGACAA GCTGCGGCGC GCGCTCGCGC TGGTGGCGGG CCTCAAGGGC
AGCGGCATCG TCTACACCGC CACGGTGAAG GCGGCCGAGG CGTTCTTCGC CGAACTGGCG
GCCGCCGGCG AGTCCGCGGG CCTGTACCAC GGCCGGCGGC GCGCCGGCGA ACGGCGCGCT
GCACAGGACG CGTTCATGGC GGGCAAGCTG CGCGTGATGG TGGCCACCAA TGCCTTCGGC
ATGGGGGTCG ACAAACCGGA CATCCGCTTC GTGCTGCACT ACCAGATGCC CTCCAGCCTC
GATGCCTACT ACCAGGAGTC GGGCCGCGCC GGCCGCGATG GCGAGCGCGC CGACTGCATT
CTTCTGTACC TGCGGCGCGA CCGCGCCGTG CAGCAGTTCT TCCTGGCCGG CTGGCTGCCC
GAGCTGGCCG AGCTGCGTGC GCTGCAGCAG CAGCTGCTGC CGATGCCGAA CGCAGCCGCG
GCGCCGGGCT GGAGCGAGGC GCAGCTCCAG CAGCGCGCAC GCCTGCCGCG CGGCAAGCTT
CGCGTGCTGC TGAGCCTGCT GCGGCAGGAA GACCTGGTGG CGCGCGACCG CGAGGGACGG
CTGCACTGGC GCGGGAAGCC GCCGCTCGAA GACGCCGAAC TCGATGCGCT TCTGGACGAA
CACCGCGAGA AGCGCGAGCA GGACCGCGAG GCGCTGGAAC GCATGACCTT CTATGCGACG
ACCGGCCTGT GCCGCTGGCA GGTGCTTCTG TCGGGCCTTG GAAGCGATGC GCTCGCGCAG
CGCTGCGGCG CCTGCGACAA CTGCGTGCGG CTGGCCCGCC ACGAGCGCGA GCGCCGTGCG
GCTGCGCGAG ACGCGGCAGC AAAGGAAGAA GCAGACCCGC CGCAGCACGC CGCCGCTTTT
GCCCGGGGAG CGTCGGTGCG CGTGCCGCGC TATGGGGTCG GATGCGTCAC GGCCGCCGAT
GCGGTCTCCG TGACGATCGA ATTTCCCGAC GGCAGCCAGC GCTGCTTCCG GCCCGAGTTC
GTGCGCCTGG TGCCCGCGCT TCGCCGGGCC TGA
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| Protein sequence | MPEHHQKPPP KKAKTTTRAA VRKQRTRAAS EAPVDRVLHE VFGHRRLRPG QRRVIDRVVG
GESTLAVMPT GAGKSLCYQV PAVLAPGQTV VVSPLIALMK DQCEKLNATG VSAVQLNSQC
TAQEIDDAQA AIADGSARVI FSTPERLADA DFLALLQRHP TSLLVVDEAH CISQWGHDFR
PAYLELGAAV RALNHPVVLA LTATANGEVA GEIMEKLGIP RAGLVDTGAY RPNLHYAVEP
AMREEDKLRR ALALVAGLKG SGIVYTATVK AAEAFFAELA AAGESAGLYH GRRRAGERRA
AQDAFMAGKL RVMVATNAFG MGVDKPDIRF VLHYQMPSSL DAYYQESGRA GRDGERADCI
LLYLRRDRAV QQFFLAGWLP ELAELRALQQ QLLPMPNAAA APGWSEAQLQ QRARLPRGKL
RVLLSLLRQE DLVARDREGR LHWRGKPPLE DAELDALLDE HREKREQDRE ALERMTFYAT
TGLCRWQVLL SGLGSDALAQ RCGACDNCVR LARHERERRA AARDAAAKEE ADPPQHAAAF
ARGASVRVPR YGVGCVTAAD AVSVTIEFPD GSQRCFRPEF VRLVPALRRA
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