| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6250 |
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| Symbol | |
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| ID | 7975466 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 987739 |
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| End bp | 988596 |
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| Gene Length | 858 bp |
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| Protein Length | 285 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 644796820 |
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| Product | extracellular solute-binding protein family 3 |
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| Protein accession | YP_002948079 |
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| Protein GI | 239820894 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.580231 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCACACAC CTCCTTCTTC TTTTTCGCGG CTCTCGCGCC GCGCCTGCCT GCAGTGGGCC
GCGGCCGCCG GCGTGGCCGC ACTCGCGGGC ACGGCGCGCG CGGGCGCGCT CGAACGGATC
CGCGCACGCG GCACGCTGAG CGTGGCGATC TACCAGGACA TGCCGCCGTT CCACGTGGCC
GGCGAGGGCA TCGACATCGA GCTGGCGCGC GCGCTGGCCG GCGCGCTCGA CGTGAAGCTC
TCGCTGCTGC CCTTCCTGGC CGACGAGAAC ATGGGCGACG ACCTGCGCAA CATGGTGTGG
CGCGGCCACT ACCTGGGCTT CGGCCCGGCC GACGTGCTGC TGCACGTGCC GGTGGACCGC
CCGCTGATGG ACGAGACGCC GCAGGCGCTC ATCTTTGCGC CGTACTACCG CGAGCGCGTG
GTGCTCGCGC GGCGGCTTGA CCGCCTGCCG CAGCTGGATA CGCTCTCGGC GCTCGGCGAT
GCGAAGGTGG CCGTGTCCGG CAAGACGCTC GCGGGCTGGC TCATGATCGG CGCCGACAAC
GGCGCCTACC GCGACCAGCT CGACACCCAG CCCAAGGACG GCGCCGAGGC CGCGCGCGCC
CTGCAGCGCG GCGAAGTGGC CGCGGCCGCG GGGCTCGCGT CCGAGATCGA GTCGGTGCTG
CGCGGCGACG CGCGCTTTGC GATTGCGCCG CTGCCCTCGC CGCGCCTCCA GCGCAACGGC
TGGGCGGTGG GCATGGCGGT CAAGAAGGAC GCCACCGACC TGGCGCAGGC GCTGCAGGCC
GGCGTCAACG CGCTGGTCCA GAGCGGGCGG CTGCGCACGC TGTTCGAAGG AGGAAACGTC
GCCTGGCAGG CGCCGTGA
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| Protein sequence | MHTPPSSFSR LSRRACLQWA AAAGVAALAG TARAGALERI RARGTLSVAI YQDMPPFHVA
GEGIDIELAR ALAGALDVKL SLLPFLADEN MGDDLRNMVW RGHYLGFGPA DVLLHVPVDR
PLMDETPQAL IFAPYYRERV VLARRLDRLP QLDTLSALGD AKVAVSGKTL AGWLMIGADN
GAYRDQLDTQ PKDGAEAARA LQRGEVAAAA GLASEIESVL RGDARFAIAP LPSPRLQRNG
WAVGMAVKKD ATDLAQALQA GVNALVQSGR LRTLFEGGNV AWQAP
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