Gene Vapar_6236 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_6236 
Symbol 
ID7975452 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012792 
Strand- 
Start bp971437 
End bp972060 
Gene Length624 bp 
Protein Length207 aa 
Translation table11 
GC content62% 
IMG OID644796806 
Productintegrase family protein 
Protein accessionYP_002948065 
Protein GI239820880 
COG category[L] Replication, recombination and repair 
COG ID[COG4973] Site-specific recombinase XerC 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGACGCTC TCACCGTCTC AGCACCACGG CCGCCGTGGA ACAAGGGCAA ACTCGTGGGA 
CAGAAGCGGC CTTTCAAGCT CAAGGAAATT TGGGCTATCC GCACTCGCCT CCAGTTGTCC 
CGTCGTACTC GTGACCTTGC ACTTTTCAAT CTCGGAATCG ACAGCAAGCT CCGGGCGTGC 
GACTTGGTGA AGCTGCGGGT CCGCGATGTT GCCAACGGCG ATCGGACGGC CGCACGGGCG 
AACGTGGTTC AGCAAAAGAC CGGGCGACCG GTCCAATTTG AGCTCACCGA TCCGACGCGG 
GAGGCCGTGT CCAGCTGGAT CAATCTGGCC CACCTTCGTT CCGAGGACTT CCTGTTCCCG 
AGCCGGGTGC ATTCGTCGCC GCATCTCGGG ACCAGGCAGT ACGCCCGAAT TGTTGATGGC 
TGGGTGGAAG AGATCGGACT GGATCCGGCC GAGTACGGCA CCCACTCAAT GCGTCGGACC 
AAGGCATCCC TGGTCTACCG CCGAACGAAG AACCTTCGCG CGGTGCAGCT CCTGCTCGGC 
CACACCAAGC TCGAGAGCAC TGTGCGCTAC CTCGGCATTG AGGTCGAGGA CGCACTGGAG 
ATGGCTGAGC AGACGGAAGC CTGA
 
Protein sequence
MDALTVSAPR PPWNKGKLVG QKRPFKLKEI WAIRTRLQLS RRTRDLALFN LGIDSKLRAC 
DLVKLRVRDV ANGDRTAARA NVVQQKTGRP VQFELTDPTR EAVSSWINLA HLRSEDFLFP 
SRVHSSPHLG TRQYARIVDG WVEEIGLDPA EYGTHSMRRT KASLVYRRTK NLRAVQLLLG 
HTKLESTVRY LGIEVEDALE MAEQTEA