| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6190 |
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| Symbol | |
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| ID | 7975080 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 923803 |
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| End bp | 924624 |
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| Gene Length | 822 bp |
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| Protein Length | 273 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644796760 |
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| Product | extracellular solute-binding protein family 3 |
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| Protein accession | YP_002948019 |
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| Protein GI | 239820834 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.221084 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCATCG ATTCCGCCAT CGTCCGGGCG TTCGCACCCA CCGGCGCATT GCGCGCCTCC
ATCAACCTCG GGAACCCGAT CCTCGCCCAT GCGGACAAGA CAACCGGCGC GCCCGCCGGC
GTTTCGGTGG ACCTGGCATG CGCCTTTGCG AAACGCCTTG GCGTCGCGCT GGAACTGGTG
GTCTTCGATG CCGCGGGAAA GTCGGTCGAA GCGGTGGCCA ACGAGCAGGC CGACATCGGC
TTCTTTGCGA TCGACCCGGT GCGCGGCGCG CAGATCGCGT TCACCGAGGC GTACGTGCTG
ATCGAGGGCA GCTATCTCGT CCGCGAGCGT TCGCCTTTGC AGCACAACGA CGAGGTCGAC
CGCGAAGGAA CCGCGGTCGC GGTCGGCAAG GGAAGCGCCT ACGACCTCTA CCTGACGTGC
GAACTCAAGC ATGCGCAGAT CGTGCGGGCA CCGACTTCGC CCACCGTGGT CCAGACCTTC
CTCGAGCAGA ACCTGGATGT GGCTGCTGGC GTGAGGCAGC AACTCGAATC GGACAGCCGC
GTGCACGCCG GCCTTCGCCT GCTGCCTGGC CGCTTCATGG TGATCCGGCA GGCCATGGGA
ACGCCCAAGA CCCGGGGCGC GGACGCGGCG CGTGCATTGC GGGTTTTCGT GGAAGAGATG
AAGGCGTCCG GCTTCGTGGC CGATGCGCTG AACAGGCACG GCATCGAAGG CGCATCGGTG
GCGCCGCCCG GGCCTGCAGA GGACGCACTC GAAGGCCGGC CTCTTTCCAT CACCCAGCGC
TCGGCCGGCC CGCTGCCCCC GCCGCTTCCA CCAGGAAGCT GA
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| Protein sequence | MTIDSAIVRA FAPTGALRAS INLGNPILAH ADKTTGAPAG VSVDLACAFA KRLGVALELV
VFDAAGKSVE AVANEQADIG FFAIDPVRGA QIAFTEAYVL IEGSYLVRER SPLQHNDEVD
REGTAVAVGK GSAYDLYLTC ELKHAQIVRA PTSPTVVQTF LEQNLDVAAG VRQQLESDSR
VHAGLRLLPG RFMVIRQAMG TPKTRGADAA RALRVFVEEM KASGFVADAL NRHGIEGASV
APPGPAEDAL EGRPLSITQR SAGPLPPPLP PGS
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