| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6138 |
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| Symbol | |
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| ID | 7975584 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 859463 |
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| End bp | 860326 |
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| Gene Length | 864 bp |
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| Protein Length | 287 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644796694 |
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| Product | intradiol ring-cleavage dioxygenase |
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| Protein accession | YP_002947968 |
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| Protein GI | 239820783 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3485] Protocatechuate 3,4-dioxygenase beta subunit |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0908917 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGAAACA TCGATGAACA CACCATCACC GCCGCCGTGC TCGAACGCAT GGCCGGCTGC
GAGGACGCGC GCCTGAAGGA AGTGATGTCG GCGCTCGTGC GCCACCTGCA CGACTTCGCG
CGCGAAGTGA AGCTGACCGA GGCCGAATGG AGCGCCGGCA TCGAGTTCCT GACCGCCACG
GGCCAGAAGT GCGACGCGCA GCGGCAGGAG TTCATCCTGC TGTCGGACAC GCTGGGCCTG
TCGATGCTGA CCGTGGCGAT GAACCACGCG AAGAGCCCGC AGGCCACCGA GGCCACCGTG
TTCGGCCCCT TCCACGTGGC GGGCGCGCCG CAGCTGCCGC TGGGCAGCGA CATCTCGGGT
GGCGCGGTGG GCGAGCCGCT GTTCGTGCAG GCCACCGTGC GCGGACCCGG CGGCGAGCCG
GTTGCCGACG CGGTGGTCGA TGTCTGGGAG GCCGACGCCG AAGGCTTCTA CGACGTGCAG
CGGCCCGGCG CGCAGCCGCA GGGGCGGGCG GTCCTGCGCA CCAACGCCGA GGGCCGGCTG
TGGTTTCGCG GCGTGGCGCC GGTGGCCTAC CCGATTCCCA CCGATGGACC GGTCGGCGCG
ATGCTGCGCG CAACGCGGCG GCATCCATGG CGCCCCGCGC ATGTGCACTT CATGATCCAG
GCGCCGGGCT ACGAGACGCT GATCACGCAC GTCTTCCGCG AGGGCGATCC CTACCTCGAC
AGCGATGCGG TGTTCGGCGT GCGCAGTTCG CTGATCGGCG ACTTCGCGCA GCACGCCGCA
GGGCGCGCGC CCGACGGGAG CGTGCAGGAA GCGCCGTTCC ACACGCTGGA GTTCGCGTTC
GTGCTCGAGC CTGCGGGGGT GTGA
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| Protein sequence | MRNIDEHTIT AAVLERMAGC EDARLKEVMS ALVRHLHDFA REVKLTEAEW SAGIEFLTAT
GQKCDAQRQE FILLSDTLGL SMLTVAMNHA KSPQATEATV FGPFHVAGAP QLPLGSDISG
GAVGEPLFVQ ATVRGPGGEP VADAVVDVWE ADAEGFYDVQ RPGAQPQGRA VLRTNAEGRL
WFRGVAPVAY PIPTDGPVGA MLRATRRHPW RPAHVHFMIQ APGYETLITH VFREGDPYLD
SDAVFGVRSS LIGDFAQHAA GRAPDGSVQE APFHTLEFAF VLEPAGV
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