Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_5704 |
Symbol | |
ID | 7975757 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012792 |
Strand | + |
Start bp | 419120 |
End bp | 419884 |
Gene Length | 765 bp |
Protein Length | 254 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 644796286 |
Product | GntR domain protein |
Protein accession | YP_002947560 |
Protein GI | 239820375 |
COG category | [K] Transcription |
COG ID | [COG2186] Transcriptional regulators |
TIGRFAM ID | |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCAGACC ATAAAACCAA AACGCCGAAG AAACCCGCCG CCCCGGAGAC GCCTGCCCGG CGCGGTCCGC TGGCCGTGAC GGAGGCGCTC GCGCGGCGCG TGATCGGCGG CGAATGGGAT GACGAATCGA CACTGCCGAC CGAGGTCGAA CTGGCCGAGC AACTGGGCGT GGCCCGCACC TCCGTGCGCG AGGCGCTCAC GCGGCTGAAG GCCAAGGGCC TGCTCGCGTC GCGCCAGAAG GCCGGCACGC GGGTGCTGCC GCGCATGCAA TGGAACATGC TCGACGAGGA CGTGCTGCGC TGGACCTGGT CGGGCCACGA CCGCGCGCAG ATGGCGCAGC ACCTGATGCA GCTGCGGCGC ATCGTCGAGC CGGCCGCCTG CGAGATTGCG GCCGCTTCGG CGCCCGACGC GGCCATTGCC GCGATCGAGC GCGCCTACCG CCTGATGGAT GCCGCCGGCA TGGACCCGGT GGCCTATGCC GGGCCGGACC TGAGCTTTCA CCAGGCGATC CTCAGCGCCA CCGGCAATCC GTTCCTGGTG GCCTTCGGCG CCACCATCGA GGCGGCGCTG CGCATGTCCT TCGAGCTGTC GACGCGCCAG CCGGGCGCGC CACGCAAGAG CCTGCCGATG CACCGCGCGG TGCTCGACCA GATCTGGGCC CGCAAGCCGG CCGCGGCGCG CAAGGCCATG GAAGAGCTGC TCGGCCTCAC CGAATCGAAC ATCCAGCGCG GGGTCGCCAG GTCGGGCGCC ACGCCGCCGG CCTGA
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Protein sequence | MSDHKTKTPK KPAAPETPAR RGPLAVTEAL ARRVIGGEWD DESTLPTEVE LAEQLGVART SVREALTRLK AKGLLASRQK AGTRVLPRMQ WNMLDEDVLR WTWSGHDRAQ MAQHLMQLRR IVEPAACEIA AASAPDAAIA AIERAYRLMD AAGMDPVAYA GPDLSFHQAI LSATGNPFLV AFGATIEAAL RMSFELSTRQ PGAPRKSLPM HRAVLDQIWA RKPAAARKAM EELLGLTESN IQRGVARSGA TPPA
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