| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5573 |
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| Symbol | |
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| ID | 7975185 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 280195 |
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| End bp | 281808 |
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| Gene Length | 1614 bp |
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| Protein Length | 537 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644796157 |
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| Product | glycosyl transferase family 39 |
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| Protein accession | YP_002947431 |
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| Protein GI | 239820246 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1807] 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0245521 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGCGGT CCGGCAGCAC CACATGGTGG ACATCGCCGC AGCCGCTGTG GCTCGTCGCG
GCTCTTTTCG CCTGGCTCAT CGCCACCGCC TGGGTCCGCC CGCTGATGGC ACCCGACGAG
GGGCGCTATG CCGGCGTGGC GCTGCAGATG CTGTATTCCG GCGACTGGCT GGTGCCGCGG
CTCGACGGCC TGCCCTTTTT CCACAAGCCG CCGCTCTTCT ACTGGATCGG CGCCGGCGCG
ATGGCGCTGG CGGGCCCGGT CGAATGGGCG GCGCGGCTGC CTTCCATCCT GGGTGCGGTC
GCGGCGGCGG CGGCGCTGTT CCTCTTCCTG CGCCGCTGGT CGACGGTGCG GCTCGCCCTG
TTGTCCACCG TGGTGCTCGT GACCACGCCC TTCTTCTTCC TGGGTGCACA GTTCGCAAAC
CTCGACATGC TGGTGGCCGG CTGCATCGCG GGCACGGTGC TGCTGGGCGC CGGCGCCGTG
CTGGCCAGGG AGCGCGGCGA ACCCTGGCGC GCGATGCTGG CGTGCGCCTA CCTGTTCGCT
GCGGCCGGTC TGCTCGCCAA GGGGCTGATC GGCGTGGTGC TGCCGGCGGC GGTGCTGCTG
GCCTGGTGCG CGGTCACGCG CAAGAGCGCC GTGCTGCGCC TGGCCGCCTG GCAGCCGGGA
TGGGCGTTGC TGCTGGCCGT GGCCGGCCCG TGGTTCGTCG CGATGCAGAT GAAGTATCCG
GAGTTCTTCG ACTACTTCGT GGTCACGCAG CATTTCCGGC GCTTCGCGTC CTCGGGCTTC
AACAACGAGC ACCCGTTCTG GTTCTACCTG CCGGTGCTGG CGGGCCTCAC GCTGCCCTGG
TTCGGCTGGC TGCTCATGCC GCGGCGCCAG GAGGCGCCGC CTGCAGGACG CCGGCTCTCC
GAGATCGACT GGCTGATGTG GATCTGGCTC GCGGTCATCG TGGCCTTCTT CTCCGTCCCG
CGTTCCAAGC TGATCGGCTA TGTGCTGCCG GCGCTGCCGC CGCTGGCGTA CCTGATCGCG
CAGCGCGCGC TGGCGGGCCG GCCGCTGGAA GCGCTGCTGC CCAGGCTGCG CGCCATGGCC
CTCGCCGCCG CGGCCGTGTG CGTGGCCTGC CTGATGGCGA TCGTGGCCTA TGCCCCGCCG
CCCGGCGCCC GGCTGCGGCC TCCGGCGGAG CTGGCCGCGG CGCCCGGCGA CCAGGTCGTG
ATGCTCGACA GCTACACCTA CGAACTGCCG TTCTACTGGC GGCTGCGCAA TCCGGTGCTC
GTCGCGGCCG ACTGGAAGGC GGCCGGCGAC GAGGGTCGCG ACAACTGGCA CAAGGAGCTG
CTGGACGCGG CGCGCTTCGA TCCCGCACGC GCGGCCGCCA CGCTCGTCGA GCGGTCGCGA
TTGGCAAGCA CGCTCTGCAG CCCGCGCACC AGCTGGCTGG TCGGGCCCAG CAACGCGCAG
CTGGCGAACC CCTGGCTGGC GCGCGCGCAG CTGGTCGCGT TCAACAAGCG CATTGCAGTG
TGGCGATTCG CCGGCAGCAC GGCGCACGAT CAGCATTGCC TGGATCTTTC GCCCGGGGCG
CCCGCGCCCG CCACGCCAGC GGCGACGGAA AAGAAGACGG ACGGCAATGA CTGA
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| Protein sequence | MKRSGSTTWW TSPQPLWLVA ALFAWLIATA WVRPLMAPDE GRYAGVALQM LYSGDWLVPR
LDGLPFFHKP PLFYWIGAGA MALAGPVEWA ARLPSILGAV AAAAALFLFL RRWSTVRLAL
LSTVVLVTTP FFFLGAQFAN LDMLVAGCIA GTVLLGAGAV LARERGEPWR AMLACAYLFA
AAGLLAKGLI GVVLPAAVLL AWCAVTRKSA VLRLAAWQPG WALLLAVAGP WFVAMQMKYP
EFFDYFVVTQ HFRRFASSGF NNEHPFWFYL PVLAGLTLPW FGWLLMPRRQ EAPPAGRRLS
EIDWLMWIWL AVIVAFFSVP RSKLIGYVLP ALPPLAYLIA QRALAGRPLE ALLPRLRAMA
LAAAAVCVAC LMAIVAYAPP PGARLRPPAE LAAAPGDQVV MLDSYTYELP FYWRLRNPVL
VAADWKAAGD EGRDNWHKEL LDAARFDPAR AAATLVERSR LASTLCSPRT SWLVGPSNAQ
LANPWLARAQ LVAFNKRIAV WRFAGSTAHD QHCLDLSPGA PAPATPAATE KKTDGND
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