Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_5518 |
Symbol | |
ID | 7975375 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012792 |
Strand | + |
Start bp | 219670 |
End bp | 220395 |
Gene Length | 726 bp |
Protein Length | 241 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 644796104 |
Product | transcriptional regulator, GntR family |
Protein accession | YP_002947378 |
Protein GI | 239820193 |
COG category | [K] Transcription |
COG ID | [COG2188] Transcriptional regulators |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0560672 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCTTCCA AGTTTCTCGA CAGTCCGATG CCGCGCTACC ACCAGCTGGC GGACCTGCTG CGCCAGCGCA TCGCGCGCGG CATCTGGCCG CGCGAGCACC GGCTGCCCTC GCTCGATGAA CTGACGGCGG AATTCGGCGT GGCGCGCGTC ACGGTGCGCC AGGCGATCGA CCTGCTCGCG CGCGAGGGCC TGGTGTCGCC GCAGCAGGGC CGCGGAACCT TCGTCACCGG CATGCCCAAC CGCGACCGTT TCATCAGCGT GGTCACCAGC CTGGACGAGC TCGCGCGCGT CTACGAGGAC ACGCAGCCGA AGATCATGAA CATCGACGAG GCGGCCACCT CCCCGCCGCT CGCACCGGGC GAAGGGCAGC CCGCCGCGCG CTACGCCTTC ATGCGCCGCG TGCACTTCCG CGACGGCCGC GCCTACTGCG TCATCAACAT CTACCTGGAC GAGCGCATCT TCCGCAAGGC GCCCGAGAAG TTCCGCACCA GGACCGTGAT CCCGCTGCTG ATCGCGATGA AGAGCGTGAA GATCGCCGCG GCGCACCAGG TGCTGACCAT CGGCACGGCC GACATGGAAG TGGCCGGGCT GCTGAAGCTG CCGATGAACG CGCCCGTGGC CGAGGTGCGC CGCATCTTCA AGGACGCGGA GGACACCGTG ATCTACCTGG CCGACGTCAC CTACCGCGGC GATGCCATCC GCGTCGAAAT GAACCTGAAA CCATGA
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Protein sequence | MSSKFLDSPM PRYHQLADLL RQRIARGIWP REHRLPSLDE LTAEFGVARV TVRQAIDLLA REGLVSPQQG RGTFVTGMPN RDRFISVVTS LDELARVYED TQPKIMNIDE AATSPPLAPG EGQPAARYAF MRRVHFRDGR AYCVINIYLD ERIFRKAPEK FRTRTVIPLL IAMKSVKIAA AHQVLTIGTA DMEVAGLLKL PMNAPVAEVR RIFKDAEDTV IYLADVTYRG DAIRVEMNLK P
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