Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_5314 |
Symbol | |
ID | 7975601 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012792 |
Strand | + |
Start bp | 10828 |
End bp | 13662 |
Gene Length | 2835 bp |
Protein Length | 944 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 644795908 |
Product | Putative membrane protein involved in toxin uptake |
Protein accession | YP_002947182 |
Protein GI | 239819997 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3064] Membrane protein involved in colicin uptake |
TIGRFAM ID | |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.17847 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCGCGT CGCAGACATC GATTCCATCC ACTTCCGGAG CCGTCAACAA CGACGTTGCA CCGGTGGTCA TCGCCCAAGC CACGGTGACC CCCATCGCTC CGATGGGATC GTCCACAGTG CCGCCGGTCG CCGCCCCCGG GCCGTCCAGC ATCGGATCGC TTTCCAATGC CACACCCGGC ACCGCGCTGA TTCGCGACGG CGTCCGGATT CCCGTGGACG GCAGCCACGC CCTTCTCACC GGCGACCGCG TGCTGGTCCC CGAAGGTGGC CAGGCCGAGG TGTTGTTTCC GGGCTCGCCT TCCAACAAGG CGCCGCTGGC CGGCGTCTTT ACCGGCGGCA CCGACGCCAC GCTCGGATCG ACCAAGCTGC CGGGCGGCCT CGAGCAGGTG AACGTCGACG TCGCCACGGG CGACCTCAAG ATCACGCCGC CCGACAACGA TGCCGATGCG GCGGCAGTTG CCGTCACCAA GGCGCACGCC GGTGCAGCCG GCATCGGCCT GGGCGAGTTC GCCCTCGGCG CGCTCGGAGC AGTCGCGCTC GGCGCGGCCT TGGGCGGCGG TGGCGGCAGC GACGGCGGAA CGGTTCCGTT CTTCCTTGGC AGCGGCAGCG GCACCGGCGG CGGTACGGGG GGCGGCCTCG ACGATGGTGA CAGCGACAGC GACAGTGATG CTGATGCTGA TGCTGATGCT GATGCTGATG CTGATGCTGA TGCTGATGCG GATGCGGATG CGGATGCGGA TGCGGATGCG GATGCGGATG CGGATGCGGA TGCGGATGCG GATGCGGACG CGGACGCGGA CGCGGATGCG GATGCGGACG CGGACGCGGA CGCGGACGCG GATGCGGATG CGGATGCGGA TGCGGATGCG GATGCGGATG CGGATGCGGA TGCGGATGCG GATGCGGATG CGGACGCTGA TGCGGACGCC GATGCGGACG CCGATGCGGA TGCCGATGCC GATGCGGATG CCGATGCCGA TGCCGATGCC GACGCCGATG CCGATGCCGA TGCCGACGCG GATGCGGATG CGGATGCGGA TGCCGATGCC GATGCCGACG CCGACGCCGA CGCCGACGCC GACGCGGATG CCGATGCCGA TGCCGATGCC GATGCCGATG CAGACGCAGA CGCAGACGGC GATCACCTCC TCGATCCGGG CGATGACCTC GCCGGCGGCT TGATCGGCTC GACCGACGAC AACCTGGGCC TGGGTGGTTC ACTGACACCG GTGCCGGGCG TCATCGACGG CGCGACCGAC CTGGTCGATG ACATCGTGTC TCCGATCCTG GGCGAGGAGT TCACGCGGGA CGATCCGAAC CAGTTCGATC CGGTGGACGA TTTCACCGAG ACCGTGGTCG ACAGCGTGGA CGGCGTGGCA GCGCCCATCA TCGATCCCCT GCTGGGCGAA GGCGCCACCG ATGCGCTGGT CGGCCAGGTC GACCACGTCA CCGATGCGCT TCAGAACGGC CTGGACAACC TCGTGGGCGA AAACGGCATC CTGAGCGGCG CGACCACGGC CCTCGGTCTC GACGGTGTCG TGGAAGACCT CGTGGGCGAC GGCGGCGTCG TCGAGAACGT GGTCGAAGGC GTGCTGGGCG AGAACAGCCT GCTGAGCGGC CTGGTCCAGG AAGAAGGCCT GGTAGGCGGC TTGCTCGCCG AAGACGGCCT GGTTGGCAAC CTGCTGGGTG AAGACAGCGC CGTCGGCGGC CTGCTGGGCA ACGTGCTGAG CGACGAAGGC GTCGTCGGCG GCCTCCTGGG TGAAGACGGC GTACTGGGCG GCCTGCTCGG CGGACCGCTG GGCCAAGAGG GTCTGCTGGG CGGCCTGCTC GGCGGCGACG GCGCACTCGG CGGCCTGCTG GGCGGCGACA GCCTGGTCGG AGGCCTGCTG GGCGGAGACG GTACGCTGGC CGGCGTGCTG GGCAGCGAAG GCCTGACCGG CAGCCTGCTC GGCCAGGACG GCGTGGTGGA CAACCTGCTC GGCGTGGACG GCGTCGCCGG CGGCCTGATC GGAGACAGCC CGCTCGGTGG CCTGCTGGGC GGCGAGGACG GCCTGCTCGG CGGCCTGACC GACGGCTTGC TGGGCGACGA TGGCTTGCTG GGCGGCCTGC TGGGCGAAGA CGGCGTGGTC GGCGGCTTGC TGTCCGGGGA CGGCGTGCTG GGCAACGTGC TCGGTGGCGA TCTCCTGGGT GGCGACTTGC TCGGCGGTGA TCTGCTGGGT GGCGTGCTGG GTGAAGACGG CCTGGTCGGC AATGTGCTCG GTGGCGACCT CTTGGGTGGT GATCTGCTCG GCGGTGATCT GCTGGGTGGC GTGCTCGGTG AGGACGGCCT TGTTGGCAAC CTGCTTGGCG GCGATCTCCT GGGTGGTGAT CTTCTCGGCG GTGACCTGCT GGGTGGCGTG CTGGGCGAAG ACGGCCTCGT CGGCAACCTG ATTGGCGGCG ATCTCTTGGG TGGCGACTTG CTCGGCGGTG ATTTGCTGGA CGGCGTGCTG GGTGAAGACG GCCTGGTCGG CAATGTGCTC GGTGGCGACC TCTTGGGTGG TGATCTGCTC GGCGGTGATC TGCTGGATGG CGTGCTGGGT GAAGACGGCT TGGTCGGCAA CGTGCTCGGC GGCGACCTCC TGAGTGGCGA CGTGCTCGGC GGCGACCTGC TCAACGGCGT GCTGGGCGAA GACGGCCTGC TCGGCAACGT GCTCGGCGGC GATCTCCCGG GCGGTGATCT GCTCGGCGGT GACCTCCTGG GTGGGACCAC CACGCCGATC ACCAGCCAGG TCGATCAAGG GCTTGGCGGC AGCGGAACGC CGGTGGCCGG CATCCTGGAC AGCGTGCTGG GCTGA
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Protein sequence | MTASQTSIPS TSGAVNNDVA PVVIAQATVT PIAPMGSSTV PPVAAPGPSS IGSLSNATPG TALIRDGVRI PVDGSHALLT GDRVLVPEGG QAEVLFPGSP SNKAPLAGVF TGGTDATLGS TKLPGGLEQV NVDVATGDLK ITPPDNDADA AAVAVTKAHA GAAGIGLGEF ALGALGAVAL GAALGGGGGS DGGTVPFFLG SGSGTGGGTG GGLDDGDSDS DSDADADADA DADADADADA DADADADADA DADADADADA DADADADADA DADADADADA DADADADADA DADADADADA DADADADADA DADADADADA DADADADADA DADADADADA DADADADADA DADADADADA DADADADADA DADADADADG DHLLDPGDDL AGGLIGSTDD NLGLGGSLTP VPGVIDGATD LVDDIVSPIL GEEFTRDDPN QFDPVDDFTE TVVDSVDGVA APIIDPLLGE GATDALVGQV DHVTDALQNG LDNLVGENGI LSGATTALGL DGVVEDLVGD GGVVENVVEG VLGENSLLSG LVQEEGLVGG LLAEDGLVGN LLGEDSAVGG LLGNVLSDEG VVGGLLGEDG VLGGLLGGPL GQEGLLGGLL GGDGALGGLL GGDSLVGGLL GGDGTLAGVL GSEGLTGSLL GQDGVVDNLL GVDGVAGGLI GDSPLGGLLG GEDGLLGGLT DGLLGDDGLL GGLLGEDGVV GGLLSGDGVL GNVLGGDLLG GDLLGGDLLG GVLGEDGLVG NVLGGDLLGG DLLGGDLLGG VLGEDGLVGN LLGGDLLGGD LLGGDLLGGV LGEDGLVGNL IGGDLLGGDL LGGDLLDGVL GEDGLVGNVL GGDLLGGDLL GGDLLDGVLG EDGLVGNVLG GDLLSGDVLG GDLLNGVLGE DGLLGNVLGG DLPGGDLLGG DLLGGTTTPI TSQVDQGLGG SGTPVAGILD SVLG
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