Gene Vapar_5314 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_5314 
Symbol 
ID7975601 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012792 
Strand
Start bp10828 
End bp13662 
Gene Length2835 bp 
Protein Length944 aa 
Translation table11 
GC content70% 
IMG OID644795908 
ProductPutative membrane protein involved in toxin uptake 
Protein accessionYP_002947182 
Protein GI239819997 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3064] Membrane protein involved in colicin uptake 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.17847 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCGCGT CGCAGACATC GATTCCATCC ACTTCCGGAG CCGTCAACAA CGACGTTGCA 
CCGGTGGTCA TCGCCCAAGC CACGGTGACC CCCATCGCTC CGATGGGATC GTCCACAGTG
CCGCCGGTCG CCGCCCCCGG GCCGTCCAGC ATCGGATCGC TTTCCAATGC CACACCCGGC
ACCGCGCTGA TTCGCGACGG CGTCCGGATT CCCGTGGACG GCAGCCACGC CCTTCTCACC
GGCGACCGCG TGCTGGTCCC CGAAGGTGGC CAGGCCGAGG TGTTGTTTCC GGGCTCGCCT
TCCAACAAGG CGCCGCTGGC CGGCGTCTTT ACCGGCGGCA CCGACGCCAC GCTCGGATCG
ACCAAGCTGC CGGGCGGCCT CGAGCAGGTG AACGTCGACG TCGCCACGGG CGACCTCAAG
ATCACGCCGC CCGACAACGA TGCCGATGCG GCGGCAGTTG CCGTCACCAA GGCGCACGCC
GGTGCAGCCG GCATCGGCCT GGGCGAGTTC GCCCTCGGCG CGCTCGGAGC AGTCGCGCTC
GGCGCGGCCT TGGGCGGCGG TGGCGGCAGC GACGGCGGAA CGGTTCCGTT CTTCCTTGGC
AGCGGCAGCG GCACCGGCGG CGGTACGGGG GGCGGCCTCG ACGATGGTGA CAGCGACAGC
GACAGTGATG CTGATGCTGA TGCTGATGCT GATGCTGATG CTGATGCTGA TGCTGATGCG
GATGCGGATG CGGATGCGGA TGCGGATGCG GATGCGGATG CGGATGCGGA TGCGGATGCG
GATGCGGACG CGGACGCGGA CGCGGATGCG GATGCGGACG CGGACGCGGA CGCGGACGCG
GATGCGGATG CGGATGCGGA TGCGGATGCG GATGCGGATG CGGATGCGGA TGCGGATGCG
GATGCGGATG CGGACGCTGA TGCGGACGCC GATGCGGACG CCGATGCGGA TGCCGATGCC
GATGCGGATG CCGATGCCGA TGCCGATGCC GACGCCGATG CCGATGCCGA TGCCGACGCG
GATGCGGATG CGGATGCGGA TGCCGATGCC GATGCCGACG CCGACGCCGA CGCCGACGCC
GACGCGGATG CCGATGCCGA TGCCGATGCC GATGCCGATG CAGACGCAGA CGCAGACGGC
GATCACCTCC TCGATCCGGG CGATGACCTC GCCGGCGGCT TGATCGGCTC GACCGACGAC
AACCTGGGCC TGGGTGGTTC ACTGACACCG GTGCCGGGCG TCATCGACGG CGCGACCGAC
CTGGTCGATG ACATCGTGTC TCCGATCCTG GGCGAGGAGT TCACGCGGGA CGATCCGAAC
CAGTTCGATC CGGTGGACGA TTTCACCGAG ACCGTGGTCG ACAGCGTGGA CGGCGTGGCA
GCGCCCATCA TCGATCCCCT GCTGGGCGAA GGCGCCACCG ATGCGCTGGT CGGCCAGGTC
GACCACGTCA CCGATGCGCT TCAGAACGGC CTGGACAACC TCGTGGGCGA AAACGGCATC
CTGAGCGGCG CGACCACGGC CCTCGGTCTC GACGGTGTCG TGGAAGACCT CGTGGGCGAC
GGCGGCGTCG TCGAGAACGT GGTCGAAGGC GTGCTGGGCG AGAACAGCCT GCTGAGCGGC
CTGGTCCAGG AAGAAGGCCT GGTAGGCGGC TTGCTCGCCG AAGACGGCCT GGTTGGCAAC
CTGCTGGGTG AAGACAGCGC CGTCGGCGGC CTGCTGGGCA ACGTGCTGAG CGACGAAGGC
GTCGTCGGCG GCCTCCTGGG TGAAGACGGC GTACTGGGCG GCCTGCTCGG CGGACCGCTG
GGCCAAGAGG GTCTGCTGGG CGGCCTGCTC GGCGGCGACG GCGCACTCGG CGGCCTGCTG
GGCGGCGACA GCCTGGTCGG AGGCCTGCTG GGCGGAGACG GTACGCTGGC CGGCGTGCTG
GGCAGCGAAG GCCTGACCGG CAGCCTGCTC GGCCAGGACG GCGTGGTGGA CAACCTGCTC
GGCGTGGACG GCGTCGCCGG CGGCCTGATC GGAGACAGCC CGCTCGGTGG CCTGCTGGGC
GGCGAGGACG GCCTGCTCGG CGGCCTGACC GACGGCTTGC TGGGCGACGA TGGCTTGCTG
GGCGGCCTGC TGGGCGAAGA CGGCGTGGTC GGCGGCTTGC TGTCCGGGGA CGGCGTGCTG
GGCAACGTGC TCGGTGGCGA TCTCCTGGGT GGCGACTTGC TCGGCGGTGA TCTGCTGGGT
GGCGTGCTGG GTGAAGACGG CCTGGTCGGC AATGTGCTCG GTGGCGACCT CTTGGGTGGT
GATCTGCTCG GCGGTGATCT GCTGGGTGGC GTGCTCGGTG AGGACGGCCT TGTTGGCAAC
CTGCTTGGCG GCGATCTCCT GGGTGGTGAT CTTCTCGGCG GTGACCTGCT GGGTGGCGTG
CTGGGCGAAG ACGGCCTCGT CGGCAACCTG ATTGGCGGCG ATCTCTTGGG TGGCGACTTG
CTCGGCGGTG ATTTGCTGGA CGGCGTGCTG GGTGAAGACG GCCTGGTCGG CAATGTGCTC
GGTGGCGACC TCTTGGGTGG TGATCTGCTC GGCGGTGATC TGCTGGATGG CGTGCTGGGT
GAAGACGGCT TGGTCGGCAA CGTGCTCGGC GGCGACCTCC TGAGTGGCGA CGTGCTCGGC
GGCGACCTGC TCAACGGCGT GCTGGGCGAA GACGGCCTGC TCGGCAACGT GCTCGGCGGC
GATCTCCCGG GCGGTGATCT GCTCGGCGGT GACCTCCTGG GTGGGACCAC CACGCCGATC
ACCAGCCAGG TCGATCAAGG GCTTGGCGGC AGCGGAACGC CGGTGGCCGG CATCCTGGAC
AGCGTGCTGG GCTGA
 
Protein sequence
MTASQTSIPS TSGAVNNDVA PVVIAQATVT PIAPMGSSTV PPVAAPGPSS IGSLSNATPG 
TALIRDGVRI PVDGSHALLT GDRVLVPEGG QAEVLFPGSP SNKAPLAGVF TGGTDATLGS
TKLPGGLEQV NVDVATGDLK ITPPDNDADA AAVAVTKAHA GAAGIGLGEF ALGALGAVAL
GAALGGGGGS DGGTVPFFLG SGSGTGGGTG GGLDDGDSDS DSDADADADA DADADADADA
DADADADADA DADADADADA DADADADADA DADADADADA DADADADADA DADADADADA
DADADADADA DADADADADA DADADADADA DADADADADA DADADADADA DADADADADA
DADADADADA DADADADADG DHLLDPGDDL AGGLIGSTDD NLGLGGSLTP VPGVIDGATD
LVDDIVSPIL GEEFTRDDPN QFDPVDDFTE TVVDSVDGVA APIIDPLLGE GATDALVGQV
DHVTDALQNG LDNLVGENGI LSGATTALGL DGVVEDLVGD GGVVENVVEG VLGENSLLSG
LVQEEGLVGG LLAEDGLVGN LLGEDSAVGG LLGNVLSDEG VVGGLLGEDG VLGGLLGGPL
GQEGLLGGLL GGDGALGGLL GGDSLVGGLL GGDGTLAGVL GSEGLTGSLL GQDGVVDNLL
GVDGVAGGLI GDSPLGGLLG GEDGLLGGLT DGLLGDDGLL GGLLGEDGVV GGLLSGDGVL
GNVLGGDLLG GDLLGGDLLG GVLGEDGLVG NVLGGDLLGG DLLGGDLLGG VLGEDGLVGN
LLGGDLLGGD LLGGDLLGGV LGEDGLVGNL IGGDLLGGDL LGGDLLDGVL GEDGLVGNVL
GGDLLGGDLL GGDLLDGVLG EDGLVGNVLG GDLLSGDVLG GDLLNGVLGE DGLLGNVLGG
DLPGGDLLGG DLLGGTTTPI TSQVDQGLGG SGTPVAGILD SVLG