| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5314 |
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| Symbol | |
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| ID | 7975601 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 10828 |
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| End bp | 13662 |
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| Gene Length | 2835 bp |
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| Protein Length | 944 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644795908 |
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| Product | Putative membrane protein involved in toxin uptake |
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| Protein accession | YP_002947182 |
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| Protein GI | 239819997 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3064] Membrane protein involved in colicin uptake |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.17847 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCGCGT CGCAGACATC GATTCCATCC ACTTCCGGAG CCGTCAACAA CGACGTTGCA
CCGGTGGTCA TCGCCCAAGC CACGGTGACC CCCATCGCTC CGATGGGATC GTCCACAGTG
CCGCCGGTCG CCGCCCCCGG GCCGTCCAGC ATCGGATCGC TTTCCAATGC CACACCCGGC
ACCGCGCTGA TTCGCGACGG CGTCCGGATT CCCGTGGACG GCAGCCACGC CCTTCTCACC
GGCGACCGCG TGCTGGTCCC CGAAGGTGGC CAGGCCGAGG TGTTGTTTCC GGGCTCGCCT
TCCAACAAGG CGCCGCTGGC CGGCGTCTTT ACCGGCGGCA CCGACGCCAC GCTCGGATCG
ACCAAGCTGC CGGGCGGCCT CGAGCAGGTG AACGTCGACG TCGCCACGGG CGACCTCAAG
ATCACGCCGC CCGACAACGA TGCCGATGCG GCGGCAGTTG CCGTCACCAA GGCGCACGCC
GGTGCAGCCG GCATCGGCCT GGGCGAGTTC GCCCTCGGCG CGCTCGGAGC AGTCGCGCTC
GGCGCGGCCT TGGGCGGCGG TGGCGGCAGC GACGGCGGAA CGGTTCCGTT CTTCCTTGGC
AGCGGCAGCG GCACCGGCGG CGGTACGGGG GGCGGCCTCG ACGATGGTGA CAGCGACAGC
GACAGTGATG CTGATGCTGA TGCTGATGCT GATGCTGATG CTGATGCTGA TGCTGATGCG
GATGCGGATG CGGATGCGGA TGCGGATGCG GATGCGGATG CGGATGCGGA TGCGGATGCG
GATGCGGACG CGGACGCGGA CGCGGATGCG GATGCGGACG CGGACGCGGA CGCGGACGCG
GATGCGGATG CGGATGCGGA TGCGGATGCG GATGCGGATG CGGATGCGGA TGCGGATGCG
GATGCGGATG CGGACGCTGA TGCGGACGCC GATGCGGACG CCGATGCGGA TGCCGATGCC
GATGCGGATG CCGATGCCGA TGCCGATGCC GACGCCGATG CCGATGCCGA TGCCGACGCG
GATGCGGATG CGGATGCGGA TGCCGATGCC GATGCCGACG CCGACGCCGA CGCCGACGCC
GACGCGGATG CCGATGCCGA TGCCGATGCC GATGCCGATG CAGACGCAGA CGCAGACGGC
GATCACCTCC TCGATCCGGG CGATGACCTC GCCGGCGGCT TGATCGGCTC GACCGACGAC
AACCTGGGCC TGGGTGGTTC ACTGACACCG GTGCCGGGCG TCATCGACGG CGCGACCGAC
CTGGTCGATG ACATCGTGTC TCCGATCCTG GGCGAGGAGT TCACGCGGGA CGATCCGAAC
CAGTTCGATC CGGTGGACGA TTTCACCGAG ACCGTGGTCG ACAGCGTGGA CGGCGTGGCA
GCGCCCATCA TCGATCCCCT GCTGGGCGAA GGCGCCACCG ATGCGCTGGT CGGCCAGGTC
GACCACGTCA CCGATGCGCT TCAGAACGGC CTGGACAACC TCGTGGGCGA AAACGGCATC
CTGAGCGGCG CGACCACGGC CCTCGGTCTC GACGGTGTCG TGGAAGACCT CGTGGGCGAC
GGCGGCGTCG TCGAGAACGT GGTCGAAGGC GTGCTGGGCG AGAACAGCCT GCTGAGCGGC
CTGGTCCAGG AAGAAGGCCT GGTAGGCGGC TTGCTCGCCG AAGACGGCCT GGTTGGCAAC
CTGCTGGGTG AAGACAGCGC CGTCGGCGGC CTGCTGGGCA ACGTGCTGAG CGACGAAGGC
GTCGTCGGCG GCCTCCTGGG TGAAGACGGC GTACTGGGCG GCCTGCTCGG CGGACCGCTG
GGCCAAGAGG GTCTGCTGGG CGGCCTGCTC GGCGGCGACG GCGCACTCGG CGGCCTGCTG
GGCGGCGACA GCCTGGTCGG AGGCCTGCTG GGCGGAGACG GTACGCTGGC CGGCGTGCTG
GGCAGCGAAG GCCTGACCGG CAGCCTGCTC GGCCAGGACG GCGTGGTGGA CAACCTGCTC
GGCGTGGACG GCGTCGCCGG CGGCCTGATC GGAGACAGCC CGCTCGGTGG CCTGCTGGGC
GGCGAGGACG GCCTGCTCGG CGGCCTGACC GACGGCTTGC TGGGCGACGA TGGCTTGCTG
GGCGGCCTGC TGGGCGAAGA CGGCGTGGTC GGCGGCTTGC TGTCCGGGGA CGGCGTGCTG
GGCAACGTGC TCGGTGGCGA TCTCCTGGGT GGCGACTTGC TCGGCGGTGA TCTGCTGGGT
GGCGTGCTGG GTGAAGACGG CCTGGTCGGC AATGTGCTCG GTGGCGACCT CTTGGGTGGT
GATCTGCTCG GCGGTGATCT GCTGGGTGGC GTGCTCGGTG AGGACGGCCT TGTTGGCAAC
CTGCTTGGCG GCGATCTCCT GGGTGGTGAT CTTCTCGGCG GTGACCTGCT GGGTGGCGTG
CTGGGCGAAG ACGGCCTCGT CGGCAACCTG ATTGGCGGCG ATCTCTTGGG TGGCGACTTG
CTCGGCGGTG ATTTGCTGGA CGGCGTGCTG GGTGAAGACG GCCTGGTCGG CAATGTGCTC
GGTGGCGACC TCTTGGGTGG TGATCTGCTC GGCGGTGATC TGCTGGATGG CGTGCTGGGT
GAAGACGGCT TGGTCGGCAA CGTGCTCGGC GGCGACCTCC TGAGTGGCGA CGTGCTCGGC
GGCGACCTGC TCAACGGCGT GCTGGGCGAA GACGGCCTGC TCGGCAACGT GCTCGGCGGC
GATCTCCCGG GCGGTGATCT GCTCGGCGGT GACCTCCTGG GTGGGACCAC CACGCCGATC
ACCAGCCAGG TCGATCAAGG GCTTGGCGGC AGCGGAACGC CGGTGGCCGG CATCCTGGAC
AGCGTGCTGG GCTGA
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| Protein sequence | MTASQTSIPS TSGAVNNDVA PVVIAQATVT PIAPMGSSTV PPVAAPGPSS IGSLSNATPG
TALIRDGVRI PVDGSHALLT GDRVLVPEGG QAEVLFPGSP SNKAPLAGVF TGGTDATLGS
TKLPGGLEQV NVDVATGDLK ITPPDNDADA AAVAVTKAHA GAAGIGLGEF ALGALGAVAL
GAALGGGGGS DGGTVPFFLG SGSGTGGGTG GGLDDGDSDS DSDADADADA DADADADADA
DADADADADA DADADADADA DADADADADA DADADADADA DADADADADA DADADADADA
DADADADADA DADADADADA DADADADADA DADADADADA DADADADADA DADADADADA
DADADADADA DADADADADG DHLLDPGDDL AGGLIGSTDD NLGLGGSLTP VPGVIDGATD
LVDDIVSPIL GEEFTRDDPN QFDPVDDFTE TVVDSVDGVA APIIDPLLGE GATDALVGQV
DHVTDALQNG LDNLVGENGI LSGATTALGL DGVVEDLVGD GGVVENVVEG VLGENSLLSG
LVQEEGLVGG LLAEDGLVGN LLGEDSAVGG LLGNVLSDEG VVGGLLGEDG VLGGLLGGPL
GQEGLLGGLL GGDGALGGLL GGDSLVGGLL GGDGTLAGVL GSEGLTGSLL GQDGVVDNLL
GVDGVAGGLI GDSPLGGLLG GEDGLLGGLT DGLLGDDGLL GGLLGEDGVV GGLLSGDGVL
GNVLGGDLLG GDLLGGDLLG GVLGEDGLVG NVLGGDLLGG DLLGGDLLGG VLGEDGLVGN
LLGGDLLGGD LLGGDLLGGV LGEDGLVGNL IGGDLLGGDL LGGDLLDGVL GEDGLVGNVL
GGDLLGGDLL GGDLLDGVLG EDGLVGNVLG GDLLSGDVLG GDLLNGVLGE DGLLGNVLGG
DLPGGDLLGG DLLGGTTTPI TSQVDQGLGG SGTPVAGILD SVLG
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