Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_5278 |
Symbol | |
ID | 7972711 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 5603081 |
End bp | 5604445 |
Gene Length | 1365 bp |
Protein Length | 454 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 644795872 |
Product | peptidase M20 |
Protein accession | YP_002947146 |
Protein GI | 239818236 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.86603 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCTCGTT CGCCACGCGC CCTCCGGCTT GCCCCCCTCG CGCCCCTTGT GCTGGCCCTG CTGTGCGCCG CGCCGGGCGC GCAGGCCCAG AACACCGCCG TCGCCCCCAC GCCGGCGCAG GTCACTCCCG AGGTGGAAAA AACCTTTACG CAGCTGATGG CGGCGCCCGC GGTCCTGAAG CTGCTCGACG CGGTCAAGGC CGACCACGAG CGTTCGGTCG AAGACCTGAA GATGCTGACC GAGATCGAAG CGCCGCCGTT CAAGGAAAGC AAGCGCGCCG AGGCCTTCCT GGCGCGCATG AAGGCGCTCG GGCTCGCCGA CGCAAAGATC GATGCCGAGG GCAACGTGGT CGGGCTGCGC AAGGGCACCG GCAACGGCCC CAAGCTGCTG GTCTCGGCCC ACCTGGACAC CGTGTTCCCC GCCGGCACCG ACGTGAAGGT GAAGGAGCAT GACGGCAAGC TCCACGCCCC CGGCATCGCG GACGATACGC GCGGCCTGTC GGTGCTGCTG TCGTGGCTCA AGGTGCTCAA CGACAACAAG GTCCAGACCG TGGGCGACCT GCTCTTCGTT GCCAATGTGG GCGAGGAAGA GCTCGGCAAC CTGCGCGGCA TGAAGGCCAT CTTCCGCGAC CACCTCGACA TCGACGGCAT GGTGGGGCTG GAGCCTTCGC CGGACGGCAA CGTGCTGGTG CTCGGCACGG CGAGCCACCG CTATGAAGTC ACGTTCAAGG GCCCGGGCGG CCACAGCTTT GCCGCCTTCG GCCAGGTGCC CAGTGCGATC CACGGCATGG GCCGCGCCAT TGCCAAGATC GCCGAAGTCC GCACGCCCAG CTTTCCCAAG ACCACCTTCA CCGTCGGCAC CGTCGGCGGC GGCACCTCGG TGAACACCAT TGCGCCCGAT GCCCGCATGG CCATCGACAT CCGCTCGGAC GACATGGCGT CGCTGCTGGA GACCGAAAAG AAGATCCTCG CAGCCATCGA CGAAGCGGTG GCCGAGGAGA ACAAGCGCTG GAACGTGGCG ACGCTGAGCG CCAGCAACAA GCTGATCGGC GACCGGCCGG GCGGGCGCAC GCCTTCAGAT TCGGTGATCG TGGAAGCGGC TGTGCGCTCG AACACCGCCT TCGGCCACAA GACGCTGCTG CGCGGCGGCA GCACCGACGC CAACGTGCCG ATGTCGTACG GCATCCCGGC CATCATCATC GGCGGCGGCG GAAAGTCGAC CGGCTTCCAT GCCCTGAGCG AAGCGATCGA CGTGACAGAT GCCTGGAAAG GCGCGCAGAA TTCGCTGGTG ACAGTGCTGG GTCTGGTCGG CGTGCAAGGG GTAAGCCCCG CATTGCTGCC CAAACGCGCA CCGCGACCCA GGTAA
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Protein sequence | MPRSPRALRL APLAPLVLAL LCAAPGAQAQ NTAVAPTPAQ VTPEVEKTFT QLMAAPAVLK LLDAVKADHE RSVEDLKMLT EIEAPPFKES KRAEAFLARM KALGLADAKI DAEGNVVGLR KGTGNGPKLL VSAHLDTVFP AGTDVKVKEH DGKLHAPGIA DDTRGLSVLL SWLKVLNDNK VQTVGDLLFV ANVGEEELGN LRGMKAIFRD HLDIDGMVGL EPSPDGNVLV LGTASHRYEV TFKGPGGHSF AAFGQVPSAI HGMGRAIAKI AEVRTPSFPK TTFTVGTVGG GTSVNTIAPD ARMAIDIRSD DMASLLETEK KILAAIDEAV AEENKRWNVA TLSASNKLIG DRPGGRTPSD SVIVEAAVRS NTAFGHKTLL RGGSTDANVP MSYGIPAIII GGGGKSTGFH ALSEAIDVTD AWKGAQNSLV TVLGLVGVQG VSPALLPKRA PRPR
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