Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_5244 |
Symbol | |
ID | 7969903 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 5565397 |
End bp | 5566350 |
Gene Length | 954 bp |
Protein Length | 317 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 644795838 |
Product | aminotransferase class IV |
Protein accession | YP_002947112 |
Protein GI | 239818202 |
COG category | [E] Amino acid transport and metabolism [H] Coenzyme transport and metabolism |
COG ID | [COG0115] Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase |
TIGRFAM ID | [TIGR01121] D-amino acid aminotransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.22582 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCACGCCG ACAGCGCCCC CTCGAAGACC AGTTCCCAGG CCTACGCCCC CGATGCACGC AACGACGCAG TGCTCGTCTA CGTGAACGGG CAGTTCGTGC CGCGGCACCA GGCGGTGGTG TCGGTGTTCG ACGCCGGCTA CGTGTGCGGC GACGGCGTGT GGGAGGGCGT GCGCCTGGTC GACGGCCGCA TCGTCTCGTT CGACGCCCAC ATCGACCGCA TGTACGAGGG CGCGAAGTCG ATCGCGCTGG ACATCGGCAT GACCCGGGCG CAGATGAAGC AGGTGGTGGT CGACACCTTC CTGCGCAACG GCATGCGCGA CGGCGCGCAT GCACGGCTCA TGGTCACGCG CGGCGTCAAG AAAACGCCCA ACCAGGACCC GCGCTTCATC ATCGGCGGCG CCACCGTGGT GTGCGTGGCC GAGCACAAGG TGGTCACGCC GGAGGCCAAG CGCAACGGCC TGAAGCTCTT CACCTCGACC CTGCGCTGCA GCGGGCCGGA CGTGTTCGAC CTGCGGCTCA ATTCGCACAG CCGCCTCAAC CTGATCCAGG CCCTGATCCA GGCCATCCAG GCCGGCGCGG ACGAGGCGCT GATGCTCGAC CCCCACGGCT TCGTCTCGAG CTGCAATTCC ACCAACTTCT TCGCGGTGCG CCACGGCGCG CTGTGGACCT CGTCGGGGCG CTACTGCTTC AACGGCATCA CGCGCGCCAC CGTGGTGCGG CTTGCACGCG AGGCGGGCAT CCCGGTGCAC GAGGGCGACT TCACGCTGGC CGAGGTCTAC GCGGCGGACG AGGCCTTCGT CACCGGCACG CTGGCCGGGC TCACGCCGGT GTCGTCGGTC GACGGCCGCG CGCTGGCGCC GCTCGGCCCG ATCACGCAGC GGCTCGATGC GCTCTACCGC GCCTACATCG CCAGCGCGAA CGAGGCCCAC GGCGCGCTGC CCGCAGCCGC CTGA
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Protein sequence | MHADSAPSKT SSQAYAPDAR NDAVLVYVNG QFVPRHQAVV SVFDAGYVCG DGVWEGVRLV DGRIVSFDAH IDRMYEGAKS IALDIGMTRA QMKQVVVDTF LRNGMRDGAH ARLMVTRGVK KTPNQDPRFI IGGATVVCVA EHKVVTPEAK RNGLKLFTST LRCSGPDVFD LRLNSHSRLN LIQALIQAIQ AGADEALMLD PHGFVSSCNS TNFFAVRHGA LWTSSGRYCF NGITRATVVR LAREAGIPVH EGDFTLAEVY AADEAFVTGT LAGLTPVSSV DGRALAPLGP ITQRLDALYR AYIASANEAH GALPAAA
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