| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5020 |
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| Symbol | |
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| ID | 7974138 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 5336961 |
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| End bp | 5339399 |
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| Gene Length | 2439 bp |
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| Protein Length | 812 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644795613 |
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| Product | membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family |
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| Protein accession | YP_002946888 |
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| Protein GI | 239817978 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG4993] Glucose dehydrogenase |
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| TIGRFAM ID | [TIGR03074] membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCGATG CCGCCGCGCG CGTTCGTGCG CCTTCTTCCG CGCTGCTCAA CATCACCGCC
GCCGTCATCG GCCTTGCAGG CCTGGGGCTG GGGGCGGCAG GCGCATGGCT CATGGTGCTC
GGCGGCTCGT GGTACTACCT GGTGGCGGGG CTCGGGCTCA TCGCCTGCGC GGTGCTGCTG
CCGCGCGGCA GCGGCGCGGG CCTCTGGGCC TATGCGGCCG TGGTGGCGTT CACGCTGCTC
TGGGCCCTGT GGGAAGTGGG CTTCGACTGG TGGCCGCTGG CGGCGCGCGG CGACGTGTTC
TTCGTGCTCG GCCTGTTCCT GCTCACGCCC TGGGTGGCGC GCGCACTCGG GCGCCGCAGC
GCCGCGGGCG TGGCGCCCGC GCGCGGCTTC CTCGGCGTGG TGCTGCTGGC CTTCCTGGCC
GCCGCGGTGT TCTCGTGGAC GCGCGATGCA ACGCGCATCG AAGGCGCCAT GCCGGCGCCG
ACGGCCGCCG CCGCGGCATC GGGCAACGCC GCACCGGCCC CGCCGAAGGA CGACTGGACG
GCCTATGGCG GCAACGGCAT GGGCCAGCGC TATTCGGCGC TCGACCAGAT CACGCCGGCC
AATGTGGGCG AGCTGCAGGA GGCATGGCAC TTTCGCACCG GCGACGTGCG CGGCCAGAGC
GGCGACCCCG AGGAGACGAC CTTCGAGGTC ACGCCGCTGA AGATCGGCGA GCGGCTTTTT
CTTTGCACGC CGCACCAGTC GGTGGTGGCG CTGAACGCGA CCACCGGCCA GCAGCTCTGG
CGCTACACGC CCGAGATCCG GCGCCCGCTG GCCCTGCAGC ACCTGACCTG CCGCGGCCTG
TCCTACGACC CGGGCAGTGC GGTGCGGCCC GCGCCCGCAG CGGCTGCTGC TTCATCGCCA
CCCGCCGCCG GCGGCGACTG CGACGCCAAG CTCTTCATGC CCACGGCCGA CGCCCGCGTC
ATCGCGCTCG ACCCCGGGAG CGGCAAGCCC TGCATGCGCT TCGGCGGCGG CACGGGCCAG
ATCGACCTCT GGAAGAACAT GCCCAACGTG AAGCCCGGCT CGTATTACTC GACCTCCCCC
GTGGTGGTGA CGCGCTCCCT CGTCATCGTG GGCGGCACGG TGCTGGACAA CGTCTCGACG
AAGGAGACCT CGGGCGTGAT CCGGGCCTTC GACATCGACA CCGGCGCGCT GGTGTGGAAC
TGGGATTCGG GCAACCCGGA CGACACCGCA CCGATCGCGG CCGACCGCAG CTACACGGCC
AATTCGCCCA ACAGCTGGTC GATCTCCAGC GTGGACGAGG CGCTCGGGCT GGTCTACGTG
CCCACCGGCA ACCAGCCGCC CGACCAGTGG GGCGGCAAGC GCACCGAAGG GGCCGAGCGC
TATTCGTCCT CGGTGGTGGC GCTGGACCTG GCGACCGGCC GCGTGCGCTG GAGCTTCCAG
ACCGTGCACC ACGACCTCTG GGACTACGAC GTGCCCTCGC AGCCCAGCCT CGTCGACCTG
CGCATCGGCA GCGAGACGGT GCCCGCGCTC GTGCAGCCGA CCAAGCAGGG CGAGCTGTTC
GTGCTCGACC GGCGCGACGG CAAGCCCCTG ACCAAGGTGC ATGAACGGCC CGCGCCGCAG
GGGCCGGCCG CGGGCGACCA CACCTCGCTC ACGCAGCCGG TGTCGGAGCT GTCCTTCGAT
CCGCCCGCGC TCACGCCGGC CGACATGTGG GGCGGCACCG TGTTCGACCA GCTGGCCTGC
CGCATCGCCT TTCACCGGCT GCGCTACGAA GGCCGCTACA CGCCGCCGTC GACCGAGGGC
TCGCTGATCT ACCCCGGCAA CTTCGGCGTC TTCAACTGGG GCGGCGTGGC GGTCGACCCG
GTGCGGCAGA TGGCGTTCAC CACGCCGGCC TCGCTGGCCT TCGTGTCCAG GCTCATTCCG
CGCGCCGACG ACACCTCGCT CTACGTGCAG GGCAAGGACC GGCCCAACGA CAGCCTGCCC
GCGCTCAACG AGAACTTCGG CGCGCCGTTC GCGGTGCAGC TGAGCGCCTT CACCTCGGTG
TTCGGCCTGC CGTGCCAGGC GCCGCCCTGG GGCCATGTGG CCGGGGCCGA CCTGCGCACC
GGCCGCGTGG TGTGGAAGCA CAAGAACGGC ACCGTGCGCG ACAGCTCGCC GCTGCCGCTG
CCCTTTGCGA TGGGCGTGCC CAGCCTCGGC GGGCCGATGA TGACGGCCGG CGGCGTGGCC
TTTCTCTCGG GCACGCTCGA CTACTACCTG CGCGCCTACG ACGTGGCCAG CGGCAAGGAG
CTCTGGCGCA GCCGCCTGCC CGCGGGCGGA CAGGCCACGC CGATGAGCTA CCGCGGCAGC
GACGGGCGCC AGTACGTGGT GGTGGCCGCG GGCGGCCACG GCTCGCTGGG CACGCGCACC
GGCGACCACG TGATCGCCTA CGCGCTGCCC AGGCGCTGA
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| Protein sequence | MPDAAARVRA PSSALLNITA AVIGLAGLGL GAAGAWLMVL GGSWYYLVAG LGLIACAVLL
PRGSGAGLWA YAAVVAFTLL WALWEVGFDW WPLAARGDVF FVLGLFLLTP WVARALGRRS
AAGVAPARGF LGVVLLAFLA AAVFSWTRDA TRIEGAMPAP TAAAAASGNA APAPPKDDWT
AYGGNGMGQR YSALDQITPA NVGELQEAWH FRTGDVRGQS GDPEETTFEV TPLKIGERLF
LCTPHQSVVA LNATTGQQLW RYTPEIRRPL ALQHLTCRGL SYDPGSAVRP APAAAAASSP
PAAGGDCDAK LFMPTADARV IALDPGSGKP CMRFGGGTGQ IDLWKNMPNV KPGSYYSTSP
VVVTRSLVIV GGTVLDNVST KETSGVIRAF DIDTGALVWN WDSGNPDDTA PIAADRSYTA
NSPNSWSISS VDEALGLVYV PTGNQPPDQW GGKRTEGAER YSSSVVALDL ATGRVRWSFQ
TVHHDLWDYD VPSQPSLVDL RIGSETVPAL VQPTKQGELF VLDRRDGKPL TKVHERPAPQ
GPAAGDHTSL TQPVSELSFD PPALTPADMW GGTVFDQLAC RIAFHRLRYE GRYTPPSTEG
SLIYPGNFGV FNWGGVAVDP VRQMAFTTPA SLAFVSRLIP RADDTSLYVQ GKDRPNDSLP
ALNENFGAPF AVQLSAFTSV FGLPCQAPPW GHVAGADLRT GRVVWKHKNG TVRDSSPLPL
PFAMGVPSLG GPMMTAGGVA FLSGTLDYYL RAYDVASGKE LWRSRLPAGG QATPMSYRGS
DGRQYVVVAA GGHGSLGTRT GDHVIAYALP RR
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