| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4860 |
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| Symbol | |
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| ID | 7971554 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 5179191 |
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| End bp | 5180318 |
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| Gene Length | 1128 bp |
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| Protein Length | 375 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644795455 |
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| Product | putative mRNA 3-end processing factor |
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| Protein accession | YP_002946730 |
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| Protein GI | 239817820 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1236] Predicted exonuclease of the beta-lactamase fold involved in RNA processing |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCGCGA AGGAAGAAGA CCATCTCGTC GTTGCTCGCC CCGAGGGGCT CTACTGCCCG
CCGGGCGATT TCTACATCGA CCCCTGGCGG CCGGTGGCGC GCGCCGTCAT CACCCATGCG
CACTCCGACC ACGCGCGCGC CGGCCACGGC CACTACCTCG CTCACACCGA CAGCGCCGGC
ACGCTGCGCA CCCGCCTTGG CGGCGACATC GCGCTGCAGA CGCTGCCGTA TGGCGAGGCG
ATCTCGCACC ACGGCGTGCG CATCTCGCTC CATCCGGCCG GCCACGTGCT GGGCTCGGCG
CAGGTGCGGC TCGAACACGG CGGCCGCGTG TGGGTGGCCT CGGGCGACTA CAAGACCGAG
CCCGACGGCA CCTGCGCGCC CTTCGAGCCC GTGCCCTGCG ACACCTTCAT CACCGAGTCG
ACCTTCGGCC TGCCGATCTA CCGCTGGCCC ACGCAGGCGG CACTGTTCGC CGAGATCGAC
GCCTGGTGGC GCGCCAATGC CGAGGCCGGC CGCGCATCGG TGCTGTTCTG CTATGCCTTC
GGCAAGGCGC AGCGCATCCT GCATGGCGTG GACGCATCGA TCGGGCCGAT CGTGGTGCAC
GGCGCCGTGG AGCCGCTCAA CGCGGTGTAC CGCGCCGCGG GCGTGGCCTT GCCGCAGACG
CTGCGCGTGA CCGATGCGGG CGTCGATGCC GCGCTGCTCA AGCGCGCGCT GGTGCTCGCG
CCGCCCTCGG CCCAGGGAAC GCCATGGATG CGCCGCTTCG GCCACCATGC CGATGCCTTC
GCGAGCGGCT GGATGCAACT GCGCGGCACG CGCCGCCGGC GCGGCGTGGA CCGCGGCTTC
GTGATGTCGG ACCACGCCGA CTGGCCCGGC CTGCAACAGG CCATCGCGGG CACGGGGGCC
GAGCGGGTGT TCGTCACCCA CGGCAGCGTG GCGGTGATGG TGCGCTGGCT CAGCGAGAAC
GGGTTGGAGG CGCAGGGCTT CAGGACCGAG TACGGCGATG AAGACGACGA GCAGGAAACT
CCCTCCCCTT CCGGGGGAGG GCCGGGGAGG GGGCAAGCGG CGCCCGATGC GGACGCAGCC
GGCCCCCATC CCAGCCTTCC CCCGGAAGGG GAAGGGGCAG AGCCATGA
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| Protein sequence | MAAKEEDHLV VARPEGLYCP PGDFYIDPWR PVARAVITHA HSDHARAGHG HYLAHTDSAG
TLRTRLGGDI ALQTLPYGEA ISHHGVRISL HPAGHVLGSA QVRLEHGGRV WVASGDYKTE
PDGTCAPFEP VPCDTFITES TFGLPIYRWP TQAALFAEID AWWRANAEAG RASVLFCYAF
GKAQRILHGV DASIGPIVVH GAVEPLNAVY RAAGVALPQT LRVTDAGVDA ALLKRALVLA
PPSAQGTPWM RRFGHHADAF ASGWMQLRGT RRRRGVDRGF VMSDHADWPG LQQAIAGTGA
ERVFVTHGSV AVMVRWLSEN GLEAQGFRTE YGDEDDEQET PSPSGGGPGR GQAAPDADAA
GPHPSLPPEG EGAEP
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