Gene Vapar_4794 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_4794 
Symbol 
ID7970264 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand+ 
Start bp5109438 
End bp5110136 
Gene Length699 bp 
Protein Length232 aa 
Translation table11 
GC content68% 
IMG OID644795389 
Producttranscriptional regulator, TetR family 
Protein accessionYP_002946665 
Protein GI239817755 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGGTATAA CTTCCGCGAC ACGGCACAAA CCCTCTGGCA AGGCCGAAAC CTCGGCCGCC 
GCCACGGCAC AGCCGCACCT GCCCCAGGGC ACCGGGCGCC AGCGCGCGGC CACGCAGGGC 
ACCGACCTGC AGCGCGAGCG CATCCTGCAG GCCGCGGCGC AGCTCTTTGC GGCGCAGGGC 
TATGCCAACA CCACCATGGC GCAGATCGTG CGCGCGCTGG GCGTGACCAA GCCCTTCGTG 
TACTACTACT TCCGCGACAA GCAGGAGATC TTCGAAACGC TGTCGTGGCG CCCCGCGGTC 
GACTGCTTCA CCGCACTCGA TTTCGCAGCC GGCGATCCGC GCCGCGCGAG CGAGAAGGTG 
CTCGAAGGCA TCGAACGGCT GATCCGCGCG ACCATTGCGC ACCATCCCTG CGCCTTCTTT 
CCGTACCGCG AGCCGCAGGT GTACCGGCCC GAATACATCG CGGCGCAGAA GAAGCTCGCA 
CATCACTTCT ACGACCTGCT CTGTCCGCTG CTCGAAGAAG CGCGCCGCGA CGGCGACCTG 
GACTTCGAGG AAACCAAGAT CACGGCCCTC GCGGCCTGCA GCCTGCCGGG CTTTCTCTAC 
AGCTGGTACC GGCCGAACGG CCGCCTCTCG CCCGACGAGG TGGCGACCGA GCTCACGAAG 
CTCGCGAGCC GCGTGATCGG CCTTCGCAGC CCGGACTGA
 
Protein sequence
MGITSATRHK PSGKAETSAA ATAQPHLPQG TGRQRAATQG TDLQRERILQ AAAQLFAAQG 
YANTTMAQIV RALGVTKPFV YYYFRDKQEI FETLSWRPAV DCFTALDFAA GDPRRASEKV 
LEGIERLIRA TIAHHPCAFF PYREPQVYRP EYIAAQKKLA HHFYDLLCPL LEEARRDGDL 
DFEETKITAL AACSLPGFLY SWYRPNGRLS PDEVATELTK LASRVIGLRS PD