| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4622 |
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| Symbol | |
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| ID | 7972832 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4907960 |
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| End bp | 4914028 |
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| Gene Length | 6069 bp |
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| Protein Length | 2022 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644795206 |
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| Product | CheA signal transduction histidine kinase |
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| Protein accession | YP_002946493 |
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| Protein GI | 239817583 |
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| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
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| COG ID | [COG0643] Chemotaxis protein histidine kinase and related kinases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGTCGACTC AAACCCCTGC CACGGCCCCC CTCGCTGGCA ACGTGCCGGC CACCGAAGAC
CTTGGGCCGC TGGCCTGGGT TCTGGGAGAA ATCCAGAAAT CCCTCGACAG CGTCGGCAAG
TCGCTGCGGC GCTTCGTGCG CGACGTGGGC AATGCCTCGG AGCTCGAAAG CGGCCCGCTG
CAGATGGCCC GCCAGCAGCT GCACCAATCC GTGGGCGCGC TGCAGATGGT GGGCAACACC
GCACCGGCGC TGGTGCTCGG CGCCATCGAG TTCGCGGTGC AGGGCTTCAT TGCCGAGCCG
CAGCGCTGCA CCGACAGTGC GGTCCAGAAG ATTGAGCGCG CCGGCTTTGC CGTCACCGAT
TTCCTCAACG CGCTCCTGGC CGGCAAGGCC GTGTCCTCGG TGGCGCTGTT CCCGCAATAC
CGCGACGTGC TCGAACTGGT CGGCAACGAG CGCGTGCATC CGGCGGACCT GTGGAGCACG
GCCTGGCGCT GGGTCGAAGT GCGGCCCGCG CTGACCCAGG CTGCCGTCAG CTATGACCCG
GCCGTGCGTT CGCGGCTCGA CCGCGAGGTG CTGCAGCTGG TCAAGACCGG CGACCCGCAG
GCCGCGCGGC GGCTGCATGC GCTGTGCCTG GGGCTCGGGC GCGGTGCGCT GCTGCCCCGC
GTTGCCAGCT TCTGGACCCT GGCCGCCGGC TTCTTCGAGG CCCTGGCGCT CGGGCTGATT
CCCGCCGATT CGTATGTGAA GCGCGCCGCT TCGCGCGTGC TGCTGCAGTA CGCCACCCTG
GCGCGCGGCG ACAGCGCGGT GTCCGACCGC CTGGGCCAGG ACCTGCTGTT CTTCTGCGCC
CAGGCCGTGC CCGGCGCGCA GGACGAGGCC GCCACCCTGC GCACCGTTCG CACCGCCTGG
GGCGTGGCCG GCGAGCGCCA GGTCGACTAC ACGGTCGAGC AGTTCGGCCG CTACGACCCG
CTGGTGCTGG CGCAGGCGCG CAAGCGCATC GAAACCGCCA AGGAAATGTG GTCGGCGCTC
TCGGGCGGCG ACATCACCCG CACGCGCCAG GTGGCCGACA CCTTCGCGCA GCTGGGCGAA
TCGCTGCAGA AGCTCCATCC GCCCATCTCG CCGATGGTGG AGGCGCTCAC CCATGCGGTC
GACGCCTCGG TGCGCTCCAG CCAGCCGCCC GATACCGAGC TGGCGATGGA AGTCGCCACC
TCGGTGCTCT ACCTGGAAGC CGCGCTCGAA GACCTGGACC CGAGCGATCC GCAGCTCACC
TCCCGCACCC TGCAGCTGGC CGGCCGCATC GAGCGCGTGC GCGCAGGCGG GCATTCGGAG
CCGCTCGAGC CCTGGATGGA GGACCTGTAC CGGCGCGTGA GCGACCGCCA GACCATGGGC
ACCGTGGTCG ACGAACTGCG CAGCCACCTG AGCGAGCTCG AGAAATCGCT CGACCAGTAT
TTCCGCCGCC CGGCCGAGAA GGCCTTGCTG CGCACCGTGC CGAGCCAGCT GCTGCAGATG
CGCGGCGTGT TCTCGGTGCT GGGGCTCGAC CAGGCCGCCA GCACCGTCCA GCGCATGCGC
GACGACGTCG AGCAGATGCT GGTGGGCAAT GCCTCGCCAA TCGAGGAGAT GCACAGCTTC
GATGCGCTCG GCAACAACCT GGGCGCGCTC GGCTTCCTGA TCGACATGCT GGGCTACCAG
CCGACGCTCG CCAAGCGCCT GTTCGTGTTC GACGCCGATG CCGGCGAACT CAAGCCGCTG
ATGGGCCGCC AGGCCGCCGA TGGGGCCGCG GAGGCCGCGA CCCCCGGCGC TGCAGCGCCC
GCAGCTGCCG AAGCGGTGCT CAGCATCGAG GAGGTCGATG CCCAGATCGC ATCGAAGCTC
GCCGCGCTCG CCACGCCCAA CCGCAAGGCG AAGGTCTCGC CCATCGAGGA ATTCAGCAGC
AAGGCCGACA GCTGGACCCA CAAGATCGCC GGTCCCGCGG CCCTGCCCGA TACCGAGGTG
ACCGAGCTCG AAGAAGACGA CCTGCAGAAC ATCTTCCTGG ACGAAGCCCG CGAGGTGGTG
CAGAACGGCC TGGCCGCCAT CGAGGAGCTC GGCGGCCACC CCGACGACAC CGAGGAACTC
ACCATCCTGC GGCGCGCGTT CCACACGCTC AAGGGCAGCT CGCGCATGGT CGGCCTGACC
GACTTCGGCG ATGCCGCCTG GTCCTTCGAA CAGGTGCTCA ACACCTGGCT GGCCGACCAG
CGCGACGCCA CGCCCGACCT GCTCACCGGC ACCCGCAAGG CGCTCGAGGA ATTCGGCCAG
TGGGTCGAAG CCATTGCGTC CGGTGCCCAG CACGGCTGGC AGTCGGCGCA TTTCAGCCGC
GTGGCCAATG CCCTGCTGGC GGGCGAACCC GTGCCCACCG CCCCCACGTG GGTCGCCGAT
GCCGACGCGC TGGCCGTGGC CGCGCGCCAC ATTGCCGCGG AGCCGCCGCC GCCCGCTCCC
GCACCGGAAC TCGCGCAACC GCTGGAGCTC CCGGAGCTGC CCGACCTGTC GCTTTCCCCC
GCAGCGCCGG TGGAAACAGC ACCCGCCGCG CAATTCGAAC TGCCGCCGCA AACGCCGCCG
GCCGCTGCAA AGCCCGAAGC CGACGACGAC TTCGCTTCCA CCGATTTCCT GGACTTCGAA
TCCCGGCCGG TGCCGGATGG CGAAGCGCTC GAGGCCTTCG ACCACAGCGC CGACTTCGAT
TTTCTTGCGC CCGCGAAAGC GCAGGAGGCG CCGGTCCAGT CGATCGCCCG CTTCACGGCG
GAACCCGCCG TCGAACCGGC ACCGGCCGCC GATGCGCCCG AATCGCCGGC CCTGGAGGGG
CTGCCCGACC TCGACTGGGC GACCGAGATC GTGCCGGCGA AGGCGGACGA GACCGCGGCA
GTTGCCGAGG AGCCCGCACC GATGCCGGTG AAGGCGGAAG AGCCCGCAGC AGTGGTGCCC
GCCGAAGAAC CCGTGGCCGC ACCGGCCCTG CTGCTGGAGC CTGAAGAATC CGCCGTTGTT
GCCGCCGCCG ACGAAGCACC GGCCCAGGTC GCGGAAGCTG CGCCCGTCGC CGCCGAAGAA
ATCGCCCCGC CGGTCGAAGC CGAAGAAGAA GAAACCGCCG AAGCCGCAGC TGCCTCCGGC
GCCGAAGACC AGGTCAAGGT CATCGGGCCG CTGCGCATCG GCATTGCGCT CTACAACGTC
TACCTCAACG AGGCCGACGA GTGGTCCCGG CAGCTCGCCA CCGAAGTGGG CGAGTGGGCG
CTCGAATCGC ACGAGCGGCT GTCCGACTCG ACCATTGCGC TCGCGCATTC GCTGGCCGGC
AGTTCGGCCA CGGTCGGCTT CCACAGCCTC TCGGGCATGG CGCGCCTGCT CGAAGCCGCG
CTGCAGCATC TGCAGATGCA GGGCAGCGGC TCGCGCGAAC AGGGCGTGGT GCTGGTGGCC
GCGGCCGACG AACTGCGCCG CCTGCTGCAC CAGTTTGCCG TCGGCTTCCT GCGCGAGCCG
TCCGAGGGAA CGCTGCAGGC GCTGCGCGAC ATTGCCGCGG CACCCATGCC GGCCGAGGCC
GCCGCGCGCG TCGAGACCCG CCCGCACCAG CATCTGGTGG CGCAGGGCAA CGTGGCCGAC
GTGGCGCTGG ACGATTCCGA AGACGCCATC GACATGGTCG ACGCGGTCGA CGTCGACCTG
TTCCCCATCT TCGAGGAAGA AGCGGCGGAG CTGCTGCCCC AGCTGGGCCA GGCGCTGCGC
CAATGGGCGC ACCACCCCGA CGACAGCGCG CCGCGCGCCT CGGTGCTGCG CACGCTGCAC
ACGCTCAAGG GCAGCGCCCG GCTGGCCGGC GCCATGCGCC TGGGCGAGCG CGCGCACCGC
ATGGAGTCCG AGATCGAAGT GCTGGGCACC CAGGGCGGCG CCGACCGGGC CGAGATCGAG
AAGCTGCTCA CGCGCCTCGA TGCGCTGCAG GCCACCTTCG ACGCCCTGCG CGCCGCGGAC
GATGCGACCC AGGCCGAAGT GGCCCAGCTG GTGGCGACGG CCTCGGTGAC TTCGCCAGGC
GTGCAGCTGG TGCAGGTTCC CGCCGAAACG GGCGTGTCCG CCAACGACGA GACACTGGTT
GCCGGCGACG GGAACGCCGG CGCGGACGCG GAAGCCGCCG CCGCGCCATC GCTGCTGCCG
CGTCCGGCCC ACGCGCTGCT GGCGCCGCTG CGCGCGGTGT CGAGCCAGGC CGTGCGCATC
CGCACCCAGC TGCTCGACCG CCTGGTGGCG CAGACCGGCG AGGTCATCAT CACGCGTTCG
CGCCTGGAGG CCGAGCTCGG CCAGCTGCGC GGTTCGCTCA CCGACCTCAC GGGCAACCTC
GACCGCCTGC GCCAGCAGCT GCGCGACATC GAGGTGCAGG CCGAAAGCCA GATGCAGTCG
CGCCTGGCCC AGGCCAAGGA TTCGCAGCAG AGCTTCGACC CGCTGGAGTT CGACCGCTTC
ACCCGCGTGC AGGAACTCAC GCGCATGATG GCCGAGTCGG TGAACGACGT GGCCACCGTG
CAGCGCACGC TGCAAAAGAC GGTGCAGGCC ACGGAAGACG ACCTCAGCGT GCAGGCGCGC
CAGACGCGCG AACTGCAGCG CGGCCTGCTG CGCACGCGCA TGGTGGAGTT CGAGGGCATC
TCCGACCGCC TCTACCGCGT GGTGCGCCAG GCCTCCAAGG ACACCGGCAA GCAGGTGCGC
CTGGACATCG TCGGCGGCTC CATCGAAATG GACCGCGGCG TGCTCGACCG CATGACGCCC
GCCTTCGAGC ACCTGCTGCG CAACTGCGTG GCGCACGGCA TCGAGGAACC GGCCGCGCGC
GAAAAGGCCG GCAAGGACGC CAACGGCCTG ATCGTGATCG ACCTGCACCA GGAGGGCAAC
GACGTCTCGG TGAGCTTCCG CGACGACGGC GCCGGCCTCG ACCATGGCCG CATCGCCGAG
CGCGCCCGCA CGCTCGGCCT GCTCGCGCCC GGCCAGGAAC TCTCGCCCGA GGAAGCCACC
GAGCTGATCT TCAAGCCCGG CTTCTCGACC GCCGGACAGG TGTCCGAACT GGCCGGCCGC
GGCATCGGCA TGGACGTGGT GCGCGCGCAG ATCGCGGCGC TCGGCGGCCG CATCGAAACG
CACAGCACGG CCGGCCAGGG CACCACCTTC AAGCTGGTGC TGCCGCTCAC CACCGCGGTG
ACGCACGTGG TGATGCTGCG CGCGGGCGAG GTGTCGATCG GCGTGCCGTC CAACCTGGTC
GAGCTGGTGC AGCGCGTGAG CAGCACCGAG CTCGAGGCCG CCTACCTGCA CAACAGCCAT
CCGTTCGGCA GCGAGCAGGT GCCTTTCTAC TGGGCCGGCG CATTGCTGCA GGCCTCGGCG
CGCAGCGAGC ACCCCACGAG CCGGAACAAC ACCGTCGTGA TCGTGCGAAG CGCGGCGCAG
CGGGTGGGCC TGCATGTGGA CGAAGTGCTG GGCAACCAGG AAGTCGTGGT CAAGAACCTC
GGGCCGCAGC TGGCCCGGCT GCCGGGCCTG GCGGGCATCT CGGTGCTGGC TTCGGGCGCG
GTGGCGCTCA TCTACAACCC GGTGGCGGTG GCCGCGGTGC ATGGCGACCA GGCGCGCGAG
CGCCAGGCCG CCGCGCTGGC CGCGCCCGCG CATGCCGCCG GCGCCGACCA CGGCGCGCCG
CAGGAGCCGT TGCCGATGCT GGCTCCGGTG GCGCCGCAGG TGCCGCTGGT GCTGGTGGTC
GACGACTCCA TCACCGTGCG CCGCGTGACG CAGCGCCTGC TGCAGCGCGA AGGCTATCGC
GTGTCCCTCG CGGCCGACGG CCTGCAGGCG CTCGAACGCC TGCAGCAGGA GCGCCCGGCG
GTGGTGCTGT CGGACATCGA GATGCCGCGC ATGGACGGCT TCGACCTGGC GCGCAACATC
CGCGCGGACG ATTCGATGGC CGGCCTGCCG ATCATCATGA TCACCTCGCG CATCGCCGAG
AAGCACCGCG ACTACGCGCG CACGCTGGGC GTGAACCACT ACCTCGGCAA GCCCTACTCG
GAAGAGGAAC TGCTGCGCCT GGTGCGCAGC TACACCAGCG AGCCTGCCGC CACGCTGGCG
GTGGCCTGA
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| Protein sequence | MSTQTPATAP LAGNVPATED LGPLAWVLGE IQKSLDSVGK SLRRFVRDVG NASELESGPL
QMARQQLHQS VGALQMVGNT APALVLGAIE FAVQGFIAEP QRCTDSAVQK IERAGFAVTD
FLNALLAGKA VSSVALFPQY RDVLELVGNE RVHPADLWST AWRWVEVRPA LTQAAVSYDP
AVRSRLDREV LQLVKTGDPQ AARRLHALCL GLGRGALLPR VASFWTLAAG FFEALALGLI
PADSYVKRAA SRVLLQYATL ARGDSAVSDR LGQDLLFFCA QAVPGAQDEA ATLRTVRTAW
GVAGERQVDY TVEQFGRYDP LVLAQARKRI ETAKEMWSAL SGGDITRTRQ VADTFAQLGE
SLQKLHPPIS PMVEALTHAV DASVRSSQPP DTELAMEVAT SVLYLEAALE DLDPSDPQLT
SRTLQLAGRI ERVRAGGHSE PLEPWMEDLY RRVSDRQTMG TVVDELRSHL SELEKSLDQY
FRRPAEKALL RTVPSQLLQM RGVFSVLGLD QAASTVQRMR DDVEQMLVGN ASPIEEMHSF
DALGNNLGAL GFLIDMLGYQ PTLAKRLFVF DADAGELKPL MGRQAADGAA EAATPGAAAP
AAAEAVLSIE EVDAQIASKL AALATPNRKA KVSPIEEFSS KADSWTHKIA GPAALPDTEV
TELEEDDLQN IFLDEAREVV QNGLAAIEEL GGHPDDTEEL TILRRAFHTL KGSSRMVGLT
DFGDAAWSFE QVLNTWLADQ RDATPDLLTG TRKALEEFGQ WVEAIASGAQ HGWQSAHFSR
VANALLAGEP VPTAPTWVAD ADALAVAARH IAAEPPPPAP APELAQPLEL PELPDLSLSP
AAPVETAPAA QFELPPQTPP AAAKPEADDD FASTDFLDFE SRPVPDGEAL EAFDHSADFD
FLAPAKAQEA PVQSIARFTA EPAVEPAPAA DAPESPALEG LPDLDWATEI VPAKADETAA
VAEEPAPMPV KAEEPAAVVP AEEPVAAPAL LLEPEESAVV AAADEAPAQV AEAAPVAAEE
IAPPVEAEEE ETAEAAAASG AEDQVKVIGP LRIGIALYNV YLNEADEWSR QLATEVGEWA
LESHERLSDS TIALAHSLAG SSATVGFHSL SGMARLLEAA LQHLQMQGSG SREQGVVLVA
AADELRRLLH QFAVGFLREP SEGTLQALRD IAAAPMPAEA AARVETRPHQ HLVAQGNVAD
VALDDSEDAI DMVDAVDVDL FPIFEEEAAE LLPQLGQALR QWAHHPDDSA PRASVLRTLH
TLKGSARLAG AMRLGERAHR MESEIEVLGT QGGADRAEIE KLLTRLDALQ ATFDALRAAD
DATQAEVAQL VATASVTSPG VQLVQVPAET GVSANDETLV AGDGNAGADA EAAAAPSLLP
RPAHALLAPL RAVSSQAVRI RTQLLDRLVA QTGEVIITRS RLEAELGQLR GSLTDLTGNL
DRLRQQLRDI EVQAESQMQS RLAQAKDSQQ SFDPLEFDRF TRVQELTRMM AESVNDVATV
QRTLQKTVQA TEDDLSVQAR QTRELQRGLL RTRMVEFEGI SDRLYRVVRQ ASKDTGKQVR
LDIVGGSIEM DRGVLDRMTP AFEHLLRNCV AHGIEEPAAR EKAGKDANGL IVIDLHQEGN
DVSVSFRDDG AGLDHGRIAE RARTLGLLAP GQELSPEEAT ELIFKPGFST AGQVSELAGR
GIGMDVVRAQ IAALGGRIET HSTAGQGTTF KLVLPLTTAV THVVMLRAGE VSIGVPSNLV
ELVQRVSSTE LEAAYLHNSH PFGSEQVPFY WAGALLQASA RSEHPTSRNN TVVIVRSAAQ
RVGLHVDEVL GNQEVVVKNL GPQLARLPGL AGISVLASGA VALIYNPVAV AAVHGDQARE
RQAAALAAPA HAAGADHGAP QEPLPMLAPV APQVPLVLVV DDSITVRRVT QRLLQREGYR
VSLAADGLQA LERLQQERPA VVLSDIEMPR MDGFDLARNI RADDSMAGLP IIMITSRIAE
KHRDYARTLG VNHYLGKPYS EEELLRLVRS YTSEPAATLA VA
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