| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4608 |
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| Symbol | |
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| ID | 7973306 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4893819 |
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| End bp | 4896134 |
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| Gene Length | 2316 bp |
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| Protein Length | 771 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644795192 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_002946479 |
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| Protein GI | 239817569 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.670183 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCTTCC GCCCATGCGA TCTCCTCGCC CGTTCCTTGG CCGTCAGCGC TCTCGCCTTC
GGGTTCGCCG TGGTGGCCCA TGCACAGCCG AAGCCTTTGG ACGATGGCGA AACGCTCCCC
GCCATCACCG TGGATGCCAG GGGCCGTTCG GAAGCCGCCC AGCAAGTTCC GATCCCGCTG
ACTTCGATCG ATGGCGAGGC CCTCGAGACG CAGCAAAGCT GGCGGCTCGA AGACCTGCAG
CAATGGTTGC CGAGTACCAG CATCACCTTC GGCGATCCGC GGCAATCGGC CATCGCGGTG
CGCGGCGTCG GCAGGAATCC ATCGAACGAC GGCCTCGAGG GCAGCACGGG CATCTACCTC
GACAACGTCT ACCTGGGCCG CGCGGGCATG GCGACATTCG ACCTGCTCGA CATCGAGCGC
GTGGACCTGC TGCGCGGGCC GCAAGGCACG CTTTTCGGCA AGAACACGAC CGCCGGCGTG
CTGGCGTTGC ACACGCGTGC GCCGAGCCGC GAGACCGAGC GCAGCCTGCA ACTCTCGATC
GGGCAGCGCG GACTTGCGCA GGGGCAAGCC ATCTTCTCGG GGCCCCTGTC GGAAGAGACG
GCGGGCCGGC TGCTGGTGTA CGGCACCCAT GAACGCGGCA ACATCGAGAA CATCTACGAT
GGCGGCAGCG TCAACGGAGG CCATCGATCC GGCATTCGCG GCCAATGGCT GCTGCGCCGT
GGCGACGCCT TCAGCCTGCG CCTGATCGCC GATGCGCACC GCGAGCGCTC CACGTACGGC
ACCCGCGTCA TCTACTCGCT GGGAAGCGGA CCGGCGGCGG CCCGCGCATG GGCCGGCGGC
GCCACCGGCA TCGTCACCGA CCCGCGGCGC TATGCGGTCA ATACCGACGG CGTGGAGCGC
GTCGATCTCG ACCAGGGTGG CGTGTCGGCC GAAGCGAGCT GGAAACTCGG GTCCGGCGCC
ACCGTCACGT CCATCACCGC CGGCCGCTCA TGGAAGTTCG TGCCGACGGC CAACGACAAC
CTCAATATCC CCGTGCTGAT CGACGGCGGC TCCCGCGTGC GCCAGCAGCA GTTCTCGCAG
GAACTGCGCT ACGCGGGGCC CACCGGCGGT GCGGTCGACT ATGTGGTGGG CGCGTTCTAC
ATGCGCCAGC GCATGCGCAA CGAGATATTC ACCGTGTTCG GTCCGCGGGC GGACATCGTT
CTGCAGGGAA CGTCCTTGCC GGTGCTCGCC AACGCGAGTA CGGTGAGCTT CGGCGCGCTC
GACACGGAGA GCTTCGCGCT CTTCTCCCAG GCCACGTGGC ACGCCACGTC CAGGCTCGAC
CTCACGGCCG GCCTGCGCAT CACGCAGGAG CGCAAGGACG GGCGCACCCA TCGCGGCGAC
TCGACCGGTG GTGCCGCTGC CACCGCGTTC CTGCGCAATC GTCCGATCGT GCTCGGTGCC
TACGACACGG GCCCCCTGGC CATCCGGAAG ACCAGTCCGT CGGCGCTCCT GGGTGCGAGC
TACCGGCTGG ATGACGGCGC GATCGGCTAC GCGAGCTTTT CGCACGGCGA GCGGTCGGGC
GGGATCAATC TGGCGGGGCC GGGTGCCGCT CCCGGCCCGC TCGGCGCCTC GTCGCTGATC
ATCGGGCCCG AACGTGTCGA CAGCCTGGAC GTCGGCGTCA AGAGCAGCCT GTGGAATGAT
CGCCTGACAC TCAACCTGAA CGCCTTCCTG GCAGGCGTGC GTGGCTACCA GACGTCGATG
TTCGTGCCTG CTGGCGCAGG CGCGGGCAAC TATGTCGAGA TCCTCACGAA CGCGGGCGAT
CTCCGTAGCC GGGGACTGGA GCTGGATGCC ATTGCGCGAC CGGCGCGCGG GCTGACCGTG
TGGGCCAACG CCGCCTTCAA CGATGCACGC TATCGACGCT ATGAGGACGC GCCTTGTCCG
TCAGAACGCG CGTTCATGCC GCAGGGGCGC TGCAGCCTGA GCGGACGGCA GGTTGCCGGG
ACGCCGCGCT GGACATTCAA CGTGGGCGCC GAATACCGCA GGCCCGTGAG CCCCACCACC
CAGCACTTCG TTTCAGCGGC GTACGCGTGG CGGTCCGCAC AGGACGGCAC GCTCGACGGG
TCGGTCCACT CGCGCATCCC GGCCTATGGC CTGCTGAACC TCGCCACCGG TTGGAAGGTC
GCACGAGGCA ATGAAATCTG GAGCATTTCG CTCTGGTTGC GCAACGCGCT CGACAAGAAG
TATTTCCCGA CCGTGGCCGC CACCGCGAAC GGTGCCTACG TGGCATCGGT CGGGACGCGG
CGCACCCTGG GACTGACAGT CCGGCTGGAC TACTGA
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| Protein sequence | MPFRPCDLLA RSLAVSALAF GFAVVAHAQP KPLDDGETLP AITVDARGRS EAAQQVPIPL
TSIDGEALET QQSWRLEDLQ QWLPSTSITF GDPRQSAIAV RGVGRNPSND GLEGSTGIYL
DNVYLGRAGM ATFDLLDIER VDLLRGPQGT LFGKNTTAGV LALHTRAPSR ETERSLQLSI
GQRGLAQGQA IFSGPLSEET AGRLLVYGTH ERGNIENIYD GGSVNGGHRS GIRGQWLLRR
GDAFSLRLIA DAHRERSTYG TRVIYSLGSG PAAARAWAGG ATGIVTDPRR YAVNTDGVER
VDLDQGGVSA EASWKLGSGA TVTSITAGRS WKFVPTANDN LNIPVLIDGG SRVRQQQFSQ
ELRYAGPTGG AVDYVVGAFY MRQRMRNEIF TVFGPRADIV LQGTSLPVLA NASTVSFGAL
DTESFALFSQ ATWHATSRLD LTAGLRITQE RKDGRTHRGD STGGAAATAF LRNRPIVLGA
YDTGPLAIRK TSPSALLGAS YRLDDGAIGY ASFSHGERSG GINLAGPGAA PGPLGASSLI
IGPERVDSLD VGVKSSLWND RLTLNLNAFL AGVRGYQTSM FVPAGAGAGN YVEILTNAGD
LRSRGLELDA IARPARGLTV WANAAFNDAR YRRYEDAPCP SERAFMPQGR CSLSGRQVAG
TPRWTFNVGA EYRRPVSPTT QHFVSAAYAW RSAQDGTLDG SVHSRIPAYG LLNLATGWKV
ARGNEIWSIS LWLRNALDKK YFPTVAATAN GAYVASVGTR RTLGLTVRLD Y
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