| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4601 |
|---|
| Symbol | |
|---|
| ID | 7973299 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 4879496 |
|---|
| End bp | 4881688 |
|---|
| Gene Length | 2193 bp |
|---|
| Protein Length | 730 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 644795185 |
|---|
| Product | type I secretion system ATPase |
|---|
| Protein accession | YP_002946472 |
|---|
| Protein GI | 239817562 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
|---|
| TIGRFAM ID | [TIGR03375] type I secretion system ATPase, LssB family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCGCCA CCACGATGCC CGAGCTTTCT GCCGCGCGCG GCCCCGAGCT GCTCGCCGGC
TGGGTCGACG CCGTGCTGGC CGTGGCCGCC CACTACCACC TGGACACCTC GCGCGAGCGC
ATCCGCGGCG CTGCCGCGTG GAGCGGCCAC GAAGACATCG GCGAGCGCGT GCGCCAGATG
GCCCGGCAGG CCGGGCTCAC CGTGCGCCAC GTGGCGCCGC GCCTGGAGAC CCTGAGCCCC
TGGCGGCTGC CCGTGGTGCT GCAGCTGCGC GACGGACAGG TGGCCGTGGT CACCGCCATC
TCGGCGCAGG GCCTGCGCGT GATGCTCGGT GGCGACCAGG GCGCGGAAAC CGTCTGCACG
ATCGACGAGC TGCAGCCCGC GCTCGAAGCC ATGGCCGTGC TGCGGCCCGC GCAGTCCGCA
CCCGACTCGC GCGTCGATGC CTACATCCGT CCCGTCGAGC CGCACTGGCT GCGACAGATC
GTGCTGGCGG ACTGGCGGCC CTACGCCCAC ATCCTTGTCG CATCGCTCGC CTATAACCTG
ATGGCGCTGG CCGGCACGCT GTTCTCGATG CAGGTGTACG ACCGCGTCGT GCCCGCGCAG
TCGCTGCCCA CGCTGCATGT GCTGTTCGGC GGCGTGCTGC TGTCGATTGC GTTCAGCTGG
GTCATGCGCG GCGCGCGCAT GCGCATCACC GACGTGGTGG GCAAGCGCGC CGACCTGCGC
ATTTCGGACC GCGTGTTCGG CCACGCGCTG CGCGTGCGCG GCTCGGCGCG CCCGCGCGCC
ACCGGCACCT TCATCTCGCA GCTGCGCGAG TTGGAGCCCG TGCGCGAAAT GCTCACGTCG
ACCACCGTGG CGGCGGTGGC CGACCTGCCG TTCTTCTTCG TGTTCTGCGT GCTCTTCTGG
TTCATTGCCG GCTGGCTCGT GCTCGTGCCG CTGGCCGCGT GCGTGCTGCT GCTCGTGCCC
AGCCTGCTGG CGCAGCCGCG CCTGCGCGCG CTGGCCCAGG CGGGCATGCG CGAATCGTCG
CTGCGCAACG CCATGCTGGT CGAGGCCGTG CAGGGCATCG ACGACATCAA GGTGCTGCAA
GCCGAGCCGC GCTTCCAGAA CCAGTGGAAC CACTACAACG CCGTCAACGC CGACTCGGGC
CTGCAACTGC GCGCGCTGCT CAACACCCTG AGCAACTGGT CGCAGACCGT GCAGGGCGGC
GCCTTTGCCT TCGTCGTGTT CTTCGGTGCG CCGCTGGTGA TGGACGGGCA GATGAGCACC
GGCGTGCTCG TGGCCGCATC GATTTTGTCG ACCCGCATGC TCGCGCCGCT GGCCGGCGTG
ACGCAGGTGC TCAACCGCTG GCAGCAGGCC AAGGTGGCCG GCGAATCGCT CGACCAGCTC
ATGAAGCTCC CGGTCGACCA CCCGCCCCAT GAGACGCGCG TGCACCGGCC CGCCGTGCAG
GGCGACTACA CGCTGCGCGA CGCCGTCTTC AGCCACGACG GCCAGACCAC CGCGCTGCAC
GTGAAGGCGC TGCACATCGG CCCTGGCGAG CGCATTGCCG TTCTCGGGTG CAACGGTGCG
GGCAAGTCGA CGCTGCTGCA GGCGCTGTCG GGTCTCATCG AACCGCGCGC GGGCAGCGTG
GTGCTCGACG GCGTGTCGAT GGCCCACATC GACCCCGCCG ACGTGCGCCG CGACGTCGGC
CTGCTCGCGC AAGACGCGCG CCTGTTTCAC GGCACCCTGC GCGAGAACCT GCAGATGGGC
ACGCCCCATG CCACCGATGC CGAACTGATC ACCGCCCTGC AAGCCACCGG CGCCTGGGCC
TTCGTGCGCC GCCTGCCCAC CGGGCTGGAC CATCCGCTGC TGGAAGGCGG GCGCGGCCTC
TCGGGCGGGC AGCGCCAGAG CCTGCTGCTC GCGCGGCTCA TGCTGCGCCG CCCCAGCGTG
CTGCTGCTCG ACGAGCCCAC CGCCTCGCTC GACGAAGTGG CCGAGCGCGA AGTGATCGAA
CAACTGCGCG CTCTGTCCGC AGGCCGCACG CTGGTGCTCG CCACGCACCG CCCGGCCATG
CTCGATGCAG TGGACCGCAT CCTCGTGGTG GACGGCGGCG CCGTCGTGCT CGACGGGCCG
CGCGACCAGG TGATGGCGCG GCTGCGCCAG GGCGCGGCCG CATCGCGCGA GACAACGGCC
CTCGCGGGCC GTGGCAAGGA GGCACAGGCA TGA
|
|---|
| Protein sequence | MTATTMPELS AARGPELLAG WVDAVLAVAA HYHLDTSRER IRGAAAWSGH EDIGERVRQM
ARQAGLTVRH VAPRLETLSP WRLPVVLQLR DGQVAVVTAI SAQGLRVMLG GDQGAETVCT
IDELQPALEA MAVLRPAQSA PDSRVDAYIR PVEPHWLRQI VLADWRPYAH ILVASLAYNL
MALAGTLFSM QVYDRVVPAQ SLPTLHVLFG GVLLSIAFSW VMRGARMRIT DVVGKRADLR
ISDRVFGHAL RVRGSARPRA TGTFISQLRE LEPVREMLTS TTVAAVADLP FFFVFCVLFW
FIAGWLVLVP LAACVLLLVP SLLAQPRLRA LAQAGMRESS LRNAMLVEAV QGIDDIKVLQ
AEPRFQNQWN HYNAVNADSG LQLRALLNTL SNWSQTVQGG AFAFVVFFGA PLVMDGQMST
GVLVAASILS TRMLAPLAGV TQVLNRWQQA KVAGESLDQL MKLPVDHPPH ETRVHRPAVQ
GDYTLRDAVF SHDGQTTALH VKALHIGPGE RIAVLGCNGA GKSTLLQALS GLIEPRAGSV
VLDGVSMAHI DPADVRRDVG LLAQDARLFH GTLRENLQMG TPHATDAELI TALQATGAWA
FVRRLPTGLD HPLLEGGRGL SGGQRQSLLL ARLMLRRPSV LLLDEPTASL DEVAEREVIE
QLRALSAGRT LVLATHRPAM LDAVDRILVV DGGAVVLDGP RDQVMARLRQ GAAASRETTA
LAGRGKEAQA
|
|---|
| |