| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4440 |
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| Symbol | |
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| ID | 7974114 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4680692 |
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| End bp | 4681873 |
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| Gene Length | 1182 bp |
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| Protein Length | 393 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644795029 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_002946317 |
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| Protein GI | 239817407 |
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| COG category | [S] Function unknown |
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| COG ID | [COG5373] Predicted membrane protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCAAGA GCCCCCTGCC GCGCACGCGC TTTCGCTTTT CTCCCACCGT GCGTGCCCTG
CTCCTGGCCA CCGCCTGTGG CATGGCATTG CCGGTGCTCG CCGCCATGGA GCACGACGAG
GTCGACCGGC TCATGCAGGC CGGCAAGCTC GACGAGGCCA TGACGCGCGC CGATGCCTTC
CTGAAGGACA AGCCCAAGGA CCCGCAGATG CGCTTCCTCA AGGGCGTGAT CCAACTGGAC
ACCGGCAAGC GCGCCGAGGC CATTGCCGCC TTCACCCAGC TCACGCAGGA CGCACCCGAA
CTGCCCGAGC CCTACAACAA CCTCGCCGTC ATCTACGCGA GCCAGAACCA GTTCGACAAG
GCGCGCAGCG CGCTCGAAAG CGCCATTCGA ACCAACCCGA GCTATGCCAC CGCGCAAGAG
AACCTCGGCG ACGTGTATGC GCGGCTGGCC AGCCAGGCCT ACAGCAAGGC GCTGCAGCTC
GACCAGAACA ACACCGCCGT GCAGCCCAAG CTCGCGGTGA TCCGCACCCT GTTCACGCCT
GCGCCGGTCG GCGGCAAGCC ATCCGCCGTT GTCGCGGCGG CAGCGCCCGA GGCCACGCTC
CGCGCGGCGC CGGCTGCGAA GGCAGCGGCA CCTGCTGCGG CACCCGCGCC CGTCACCAAG
GCGCCCGCCG CTCCGGCGCC TGCGCCCGCG CCTGCGCCGG CTCCCGTCAA GGCAGCAGCG
GCCCCCGCAC CAGCGCCCGC AGCACCGCCG CCGCCGCCGC CCACCGTGGT GGCCAAGGCA
CCCGAGGCTG CGCCGCTGCC GGCGGCGCCC GCGCCAGCAC CGGCTGCGGC GCCCTCTTCC
ACCTCCACCG CCGAAGTCGA ATCGGCCGTG CGCGGATGGG CTGCCGCATG GGCCGGCCAG
GACATGGACC GCTACCTTGC CGCCTACGGC CCCGACTTCA ACCCCGGCGG CGGACAAAGC
CGCAAGAGCT GGGAAGAGGA ACGCCGCGCG CGCATCGTCG GCAAGTCGAG CATCAGCGTG
AACATCGAGA ACCTCGTGAT CAGCGTCAAC GGGCAGGCCG CAACCGCCAA GTTCCGCCAG
ATCTACCGCG CCGACAACCT CAACATCTCG AGCCGCAAGA CGCTCGAGCT GCAACGCGCC
GGCAACCAGT GGCACATCCG CAAGGAAAGC GTCGGCGGCT AG
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| Protein sequence | MPKSPLPRTR FRFSPTVRAL LLATACGMAL PVLAAMEHDE VDRLMQAGKL DEAMTRADAF
LKDKPKDPQM RFLKGVIQLD TGKRAEAIAA FTQLTQDAPE LPEPYNNLAV IYASQNQFDK
ARSALESAIR TNPSYATAQE NLGDVYARLA SQAYSKALQL DQNNTAVQPK LAVIRTLFTP
APVGGKPSAV VAAAAPEATL RAAPAAKAAA PAAAPAPVTK APAAPAPAPA PAPAPVKAAA
APAPAPAAPP PPPPTVVAKA PEAAPLPAAP APAPAAAPSS TSTAEVESAV RGWAAAWAGQ
DMDRYLAAYG PDFNPGGGQS RKSWEEERRA RIVGKSSISV NIENLVISVN GQAATAKFRQ
IYRADNLNIS SRKTLELQRA GNQWHIRKES VGG
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