15 homologs were found in PanDaTox collection
for query gene Vapar_4269 on replicon NC_012791
Organism: Variovorax paradoxus S110



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012791  Vapar_4269  hypothetical protein  100 
 
 
433 aa  863    Variovorax paradoxus S110  Bacteria  normal  0.918758  n/a   
 
 
-
 
NC_007348  Reut_B5234  hypothetical protein  32.08 
 
 
443 aa  185  1.0000000000000001e-45  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007973  Rmet_1740  hypothetical protein  30.58 
 
 
443 aa  174  3.9999999999999995e-42  Cupriavidus metallidurans CH34  Bacteria  normal  0.130481  normal  0.345273 
 
 
-
 
NC_006349  BMAA1389  hypothetical protein  31.63 
 
 
519 aa  159  1e-37  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A2312  hypothetical protein  32.08 
 
 
516 aa  158  1e-37  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A0998  hypothetical protein  32.23 
 
 
521 aa  158  1e-37  Burkholderia pseudomallei 1106a  Bacteria  normal  0.464233  n/a   
 
 
-
 
NC_009075  BURPS668_A1084  hypothetical protein  31.84 
 
 
521 aa  157  4e-37  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_008835  BMA10229_0145  hypothetical protein  31.87 
 
 
478 aa  156  5.0000000000000005e-37  Burkholderia mallei NCTC 10229  Bacteria  normal  0.955464  n/a   
 
 
-
 
NC_008784  BMASAVP1_0503  hypothetical protein  31.87 
 
 
478 aa  156  6e-37  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_1326  hypothetical protein  29.6 
 
 
584 aa  123  5e-27  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.157245  normal  0.783415 
 
 
-
 
NC_010172  Mext_1166  hypothetical protein  30.29 
 
 
584 aa  122  8e-27  Methylobacterium extorquens PA1  Bacteria  normal  0.981297  normal  0.431954 
 
 
-
 
NC_010725  Mpop_0275  hypothetical protein  29.32 
 
 
582 aa  118  3e-25  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_007959  Nham_4221  hypothetical protein  27.93 
 
 
424 aa  98.2  3e-19  Nitrobacter hamburgensis X14  Bacteria  normal  0.287374  n/a   
 
 
-
 
NC_009485  BBta_3603  hypothetical protein  24.05 
 
 
489 aa  88.6  2e-16  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.0158182 
 
 
-
 
NC_011368  Rleg2_4644  hypothetical protein  21.36 
 
 
410 aa  43.5  0.007  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.844377 
 
 
-
 
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