| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3899 |
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| Symbol | |
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| ID | 7970328 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4131161 |
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| End bp | 4132078 |
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| Gene Length | 918 bp |
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| Protein Length | 305 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644794485 |
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| Product | transcriptional regulator, LysR family |
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| Protein accession | YP_002945779 |
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| Protein GI | 239816869 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.531376 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATAGAAA ATCTATCGTT CATGGAAACA GCCTACCTGC AAAGCTTTCT TCTGGTGGTG
GAGTCGGGCT CCATGTCGGA AGCCGCGCGC CGCCTCGACC TGACGCCCGC GGCCGTGGCG
CAGCAGATCC GCACGCTGGA GCGCGAACTC GGCGCCCCGC TCCTGGCGCG CGCCGGCCGC
ACGGTGCAGC CCACCGAGGC CGGGCACCAG CTGGTGCAGC GGGCGCGCAA CCTGCTGCGC
GAGGTGAACG ACATCAAGGC GCTGCTCGGC AGCGACGCGG CCGGCGGCGA GTTGCTGGTC
GGCACCATCA ACACGGCCAT CCACAGCCTG CTGCCGGACA TCCTTGCGCG CTTCGTGAAG
ACGCATCCGG GCGTCAAGGT GTTCCTGCAG TCGGGCACCA CGGCCACGCT CTACAAGGCA
GTGCAGCAGG GCGATCTCGA TGCGGCCGTG TGCCTCTATC CACCGTATGT GCTTGCCAAG
ACCTTCGACT GGTCGCTGCT GCGCGAGGAG CCGCTGGTGC TGCTGGCGCC CAGCCGCCTT
GCGCGGCGCG ATCCGCACGA ACTGCTGCGC AGCTCGCCGC TGATCCGCTA CGACCGCAAC
CTGGGCGGCG GCAAGCAGGC CGACCGCTAC CTGCGCGCCG CGGGCATCGT GCCGCAGGAG
CGCTTCGAAC TGAGTTCGCT GCTGGCCATT GCCATGATGG TCGACCGCGG CCTGGGCGTC
TCGCTGGTGC CCGACATCGC CTCGCCGCTG CTCGACGGCC AGCGCGTGGC GAAGATCGCG
CTGCCGCTGC CTTCGGAGCC GCGGCGCTTC GGCGTCCTGT GGCAGCGCGC ATCACCGCGC
CTGCGATTGA TCCAGGGCTT TGTCGACAGT GCGCGGAGGG TGGCCGAAGT GAAGCCGCGC
GGCACGGCCC ACAAATGA
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| Protein sequence | MIENLSFMET AYLQSFLLVV ESGSMSEAAR RLDLTPAAVA QQIRTLEREL GAPLLARAGR
TVQPTEAGHQ LVQRARNLLR EVNDIKALLG SDAAGGELLV GTINTAIHSL LPDILARFVK
THPGVKVFLQ SGTTATLYKA VQQGDLDAAV CLYPPYVLAK TFDWSLLREE PLVLLAPSRL
ARRDPHELLR SSPLIRYDRN LGGGKQADRY LRAAGIVPQE RFELSSLLAI AMMVDRGLGV
SLVPDIASPL LDGQRVAKIA LPLPSEPRRF GVLWQRASPR LRLIQGFVDS ARRVAEVKPR
GTAHK
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