| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3683 |
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| Symbol | |
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| ID | 7973916 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3883232 |
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| End bp | 3884272 |
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| Gene Length | 1041 bp |
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| Protein Length | 346 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644794267 |
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| Product | Endonuclease/exonuclease/phosphatase |
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| Protein accession | YP_002945565 |
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| Protein GI | 239816655 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2374] Predicted extracellular nuclease |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAAGACA TCCCGCCCAA CTACGCCACG CTCTTCGTCG CCACCTGCAA CCTGCTGAAT
CTCGCGAACC CGCACCGGTT GTATTACGAG AACCAGGACG CCTACGACGA GCGCGAATAC
GAACGCAAGA TCGCCTGGAC CGGCGAGCGC TTCCACGCGC TCAATGCCGA TGTGCTCGCG
GTGCAGGAGG TCTGGGACGA GAGCGCGCTG AAGGCGGCCA TTGCGCGCAG CGGCCTGCGC
TACGACTTCG TCTCGGTCCC GGGCGCGGAG AACACGCCGC CGCCCGCGAG CCCGCCGGGC
ACGCCTGCAC GGCCGGGCGC GCAGGGCACG CCGCGGGTCG GCATTGCCAC GCGGCTGCAG
GTGGACGAGG TCCGGTCCTT CGTCGACTTT CCGCCCGGCT TCGGGGTCGA GGTGCCGGGC
CTGGGCCCGC ACACGCGCTT CGAGCGCCCG CCCCTTCTGG CCACGCTGCG CATGAAGCAC
GGGCAGCAGG TGCACGTGCT CACGGTGCAC CTCAAATCGA AGCGGCCGAA GTTCCTGCAG
GACGCGCAGG GCCATGCCCT GGAAGACCGG GAGGACCGCA AGGTCGGCGT GATGGCTTCG
CTGCGCTCGC TCGTCATGCG CGGCGTCGAG GCGGCGGCCC TGCGCTGCAT CGTGATCGAC
CTGCTGCAGG GCACCAACAC GCCGCTGGTG GTGATGGGCG ACTTCAACGA CGACCCGCAC
AGCGTCACCA CGCAGCTGGT GGCCGCCACC TCCGAGGTGG CCTACGACAA GGCCGCGCGC
GACGTGGCCC TGTTCAACGC CTACGAGATG CAGGGCGAAT CGGCACTCAA GAAGGACGTG
GCCTATTCGC ACATCCACCA GGGCTTTCCG GCCGTGCTCG ACCAGATCTT CGTGAGCGAG
GAATTCGTTG CGACGAGCCG GCGCAGCCTG GGCGACGTGC GCCGGGTCGA CTACTTCAAC
GACCACCTGC ACGAAGGCCG GGACCGCTCG CGCTCGGACC ACGGCTTCGT GCGCGCGCTG
CTGCGGCTGC GCACCGACTG A
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| Protein sequence | MQDIPPNYAT LFVATCNLLN LANPHRLYYE NQDAYDEREY ERKIAWTGER FHALNADVLA
VQEVWDESAL KAAIARSGLR YDFVSVPGAE NTPPPASPPG TPARPGAQGT PRVGIATRLQ
VDEVRSFVDF PPGFGVEVPG LGPHTRFERP PLLATLRMKH GQQVHVLTVH LKSKRPKFLQ
DAQGHALEDR EDRKVGVMAS LRSLVMRGVE AAALRCIVID LLQGTNTPLV VMGDFNDDPH
SVTTQLVAAT SEVAYDKAAR DVALFNAYEM QGESALKKDV AYSHIHQGFP AVLDQIFVSE
EFVATSRRSL GDVRRVDYFN DHLHEGRDRS RSDHGFVRAL LRLRTD
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