| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3556 |
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| Symbol | |
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| ID | 7972182 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3752736 |
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| End bp | 3754037 |
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| Gene Length | 1302 bp |
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| Protein Length | 433 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644794141 |
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| Product | efflux transporter, RND family, MFP subunit |
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| Protein accession | YP_002945439 |
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| Protein GI | 239816529 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR00999] Membrane Fusion Protein cluster 2 (function with RND porters)
[TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACACCG AAGAAGAACG CAAGCCTTTC GCCGAGCGCA TCGGCAGGAA GCAGTGGATC
GCCATCGCGG TCGTGCTGGC GCTAGGCCTG GGCGCCGGCG CGATGATCCT GCGCACCGCG
CCGCCCGCGC CCGAAGCGGC GGGGCATTCG GAAGCCGAGG GGCATGCCGA TGGCGAGCAC
CATGAGGAAG GCAAGGCCGA GGGCAAGGAC GAGCACGGCC ACGGCCACGG CGAAGCCAAG
GGCCATGCCG CCGAGGAGCA CAACGAGGAA GAAGAGAAGA AGATCGCCTT CACCGACGCG
CAGATCCAGG CCGCCGGCGT GGCGATCGAA AGTGCCGGCC CGGCGCGCAT CAAGACCACG
CTGCAGTTGC CCGGCGAGAT CAAGTTCAAC GAAGACCGCA CGGCCCACGT GGTGCCGCGC
GTGGCGGGCG TGGTCGAGAG CGTGCCGGCC AACCTCGGGC AGGAGGTCAA GCGCGGACAG
GTGCTGGCGG TGCTCTCGAG CCCGACGCTG TCGGAGCAGC GCAGCGAGCT TCGGTCGGCA
CAGCGCCGGC TCGAGCTGGC CCGCACCACC TACCAGCGCG AGAAGAAACT CTGGGAAGAA
AAGATCTCGG CCCAGCAGGA CTACCTGCAG GCGCAGCAGG CCATGCAGGA GGCGCAGATC
GCCGTGGCCA ATGCGAACCA GAAGCTGCTG GCGCTGGGCG CCGCGCCCGC CTCTTCGGCC
CTGGGCCGCT ACGAGTTGCG CGCGCCCTTC GACGGCATGG TGGTCGAGAA GCACATCTCG
CTCGGCGAAT CGGTGAAGGA AGACGCCAGC GTCTTCACCA TTTCCGATCT CTCGACCGTG
TGGGCCGAGA TCAGCGTGGC CGCCAGCAAC CTGAACCTGG TGCGCGTCGG CGAGCCGGTG
AGCATCCGCT CCAGCGCGTT CGAGCAGGCG GCCAGCGGCA CGGTGTCCTA CGTCGGCTCG
CTGATCGGCG CGCAGACGCG CACCGCCACG GCGCGCGTCA CGGTGACGAA CCCGCAGCGC
ATCTGGCGGC CCGGGCTGTT CGTGAATGTG GAGCTGGTCT CGTCGGAGAT GGAGGCGCCG
GTGACGGTTT CGGCCGACGC GGTGCAGGCG GTGGAAGACA AGCCCACCGT CTTCCTCAAG
GTGCCCGGCG GCTTCATTCC GCAGCAGGTG CAGACCGGCC GCAGCGACGG ACGGCGCATC
GAAGTGTTGA GCGGCCTGAA GCCCGGCGCG GCCCATGCCG CGAGCGGCAG CTTCGTCGTG
AAGTCGCAGC AGGGCAAGAG CTCTGCCACC CACACCCACT GA
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| Protein sequence | MNTEEERKPF AERIGRKQWI AIAVVLALGL GAGAMILRTA PPAPEAAGHS EAEGHADGEH
HEEGKAEGKD EHGHGHGEAK GHAAEEHNEE EEKKIAFTDA QIQAAGVAIE SAGPARIKTT
LQLPGEIKFN EDRTAHVVPR VAGVVESVPA NLGQEVKRGQ VLAVLSSPTL SEQRSELRSA
QRRLELARTT YQREKKLWEE KISAQQDYLQ AQQAMQEAQI AVANANQKLL ALGAAPASSA
LGRYELRAPF DGMVVEKHIS LGESVKEDAS VFTISDLSTV WAEISVAASN LNLVRVGEPV
SIRSSAFEQA ASGTVSYVGS LIGAQTRTAT ARVTVTNPQR IWRPGLFVNV ELVSSEMEAP
VTVSADAVQA VEDKPTVFLK VPGGFIPQQV QTGRSDGRRI EVLSGLKPGA AHAASGSFVV
KSQQGKSSAT HTH
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