| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3470 |
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| Symbol | |
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| ID | 7972581 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3654355 |
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| End bp | 3655311 |
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| Gene Length | 957 bp |
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| Protein Length | 318 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644794054 |
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| Product | Pyridoxal-5'-phosphate-dependent protein beta subunit |
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| Protein accession | YP_002945353 |
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| Protein GI | 239816443 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1171] Threonine dehydratase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.380484 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAACTAC CTACCTACGA CGACGTCATC GCCGCGGCCG CGCGGCTCAA GGGCCACGCC
CACCGCACGC CTGTGCTGCA ATCGCAGACG GCCGACGAGC GCTGGGGCGC CAGCTTCTTC
TTCAAGTGCG AGAACTTCCA GCGCATGGGT GCCTTCAAGT TCCGCGGTGC GTTCAATGCG
CTGTCGAAGT TCGACGCCGC GCAGCGCAAG GGCGGCGTGA TCGCGTTCTC TTCGGGCAAC
CATGCGCAGG CCATTGCGCT GTCGGCCCGG CTCTTGTCGA TGCCGGCCGT GATCGTCATG
CCCAAGGACG CGCCCGCGGC CAAGGTTGCG GCCACGAAGG GCTACGGCGC CGAAGTGGTG
ATGTACGACC GCTTCACCGA AGACCGCGAG GCGCTCACGA AGCGGCTCGC ACAGGAACGC
GGCATGACGA TGATCCCGCC CTACGACCAC CCGGACGTGC TCGCGGGGCA GGGCACGGCG
GTGAAGGAAC TCATCGAGGA GACCGGTCCG CTCGACCAGC TGTTCGTGTG CCTGGGCGGC
GGCGGGCTGC TGTCGGGTTC GGCGCTGTCG GCGCGCGCGC TGGCGCCCGG TTGCAAGGTC
TACGGCGTGG AGCCCGAGGC GGGCAACGAC GGCCAGCAAT CATTGCGCGC GGGAAAGATC
GTGCACATCG AAACGCCCAA GACCATTGCC GACGGCGCGC AGACGCAGCA CCTGGGGCAG
TACACCTTCG GCATCATCAA GCGCGACGTG GACGACATCT TCACCGTGAC CGACCCGCAG
CTCGTCGATG CAATGCGCTT CTTTGCCGAG CGCATGAAGA TCGTGGTGGA GCCGACCGGT
TGCCTCGCCT TCGCGGGCGC GATTGCCGCG GACAAGGCCA TCGCGGGCCA GCGCGTGGGC
ATCGTGGTCA GCGGCGGCAA CGTCGACCTC TCGCGCTACG CTGCGTTGCT CGCGTAG
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| Protein sequence | MQLPTYDDVI AAAARLKGHA HRTPVLQSQT ADERWGASFF FKCENFQRMG AFKFRGAFNA
LSKFDAAQRK GGVIAFSSGN HAQAIALSAR LLSMPAVIVM PKDAPAAKVA ATKGYGAEVV
MYDRFTEDRE ALTKRLAQER GMTMIPPYDH PDVLAGQGTA VKELIEETGP LDQLFVCLGG
GGLLSGSALS ARALAPGCKV YGVEPEAGND GQQSLRAGKI VHIETPKTIA DGAQTQHLGQ
YTFGIIKRDV DDIFTVTDPQ LVDAMRFFAE RMKIVVEPTG CLAFAGAIAA DKAIAGQRVG
IVVSGGNVDL SRYAALLA
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