Gene Vapar_3381 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_3381 
Symbol 
ID7970619 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand+ 
Start bp3561918 
End bp3562544 
Gene Length627 bp 
Protein Length208 aa 
Translation table11 
GC content71% 
IMG OID644793965 
Producthypothetical protein 
Protein accessionYP_002945264 
Protein GI239816354 
COG category[S] Function unknown 
COG ID[COG4339] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones9 
Plasmid unclonability p-value0.122497 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCGCCCG AGGCACTGCG GAACCACTGG AACGCTGCCT GGCGCGCGCT GGGCGTGGCC 
GCTGCCGACG AGGCGCTCGG CATCGAGCTG CAGCGCCGCT ACGGCGAGCC GCAGCGCCGC 
TACCACACGC TGCAGCACCT CGGCGAATGC CTGGCCTGGT TCGAGCGCGA GAAGGAAGCG 
GCCGAGCACC CCGGTGAAGT GGCGCTCGCG CTGTGGTTCC ACGACGCGGT CTACGACGTG 
CATGCGCACG ACAACGAGGC ACGCAGCGCC GATTGGGCGC GCAGCGCCAT CGTCTCGGCC 
GGTGCTCCGG CCGAGGCCGC AGAACGCGTG CATGCCCTCG TGATGGCCAC GCGCCACGAT 
GCCGTGCCCG AAGGCCGCGA CGCCGAACTG CTGGTCGACA TCGACCTGTC GATCCTCGGC 
GCGGATCCTG CACGCTTCGA CGAATACGAA CGGCAGGTGC ATGCCGAATA TGCCTTCGTG 
CCCGACGAGG TACGCCGGCC GCGCCGCCGC GCGATCCTTC AGCGCTTTCT CGCGCGCGAG 
GCGATCTACG CCACGCCGCG AATGCATGCG CTGCTGGAGG CAAGGGCTCG CGCCAACCTG 
GCACGGTCGA TCGCGGCGCT GGCCTGA
 
Protein sequence
MAPEALRNHW NAAWRALGVA AADEALGIEL QRRYGEPQRR YHTLQHLGEC LAWFEREKEA 
AEHPGEVALA LWFHDAVYDV HAHDNEARSA DWARSAIVSA GAPAEAAERV HALVMATRHD 
AVPEGRDAEL LVDIDLSILG ADPARFDEYE RQVHAEYAFV PDEVRRPRRR AILQRFLARE 
AIYATPRMHA LLEARARANL ARSIAALA