| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3285 |
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| Symbol | |
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| ID | 7973681 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3459542 |
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| End bp | 3460216 |
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| Gene Length | 675 bp |
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| Protein Length | 224 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644793870 |
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| Product | two component transcriptional regulator, winged helix family |
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| Protein accession | YP_002945169 |
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| Protein GI | 239816259 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00225391 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCGCATAT TGCTCGTCGA AGATGACAGT GCGTTGGCAG ACGCCGTCTG CAGCTACCTG
GTTGCAAAGG CTTTCGTGGT CGACGTGGCG CCCAGCCTCG CCGATGCGCG CAGCGCCCTG
CTTTCGGTGC AGTACGCCGC CGTGCTGCTC GACCTGCACC TGGGCGACGG CGACGGCCTG
TCGCTGCTGC CCCAGGTGCG CGCGCTGCGC GAGCCGCCGA TCGTCATCGT GCTGACGGCG
CGCGACCAGG TCACCGACCG CATCCGCGGC CTCGACGCCG GCGCCGACGA CTACCTCATC
AAGCCCTACG ACCCGGCCGA GCTGCTGGCG CGGCTGCGCG CCGTGGAGCG GCGGCGCAGC
GCCGGCAGCT CGCCGGTGCT GCACCTGGGC ACGCTGGAGA TCGACCTGGC GCACGATCGG
GTCCGCAAGG ACGGCAACCC GGTCGTCCTC ACGCAGAAGG AATGGGCCCT GCTGCGCGTG
ATGGCCACGC GGCCCGAGCG CATCCACACC CGCGAGAACC TGGCCGACGC GCTCTACGGC
TTCGGCGACG AGGCCGACAG CAACACGCTC GAAGTGTTCA TCAGCCGCCT GCGGCGCAAG
CTGGGCAAGA ACCACATCCA GACACTGCGC GGCCTCGGCT ACCGGCTGTC GACCTCGTCG
GGCGACGACG AATGA
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| Protein sequence | MRILLVEDDS ALADAVCSYL VAKAFVVDVA PSLADARSAL LSVQYAAVLL DLHLGDGDGL
SLLPQVRALR EPPIVIVLTA RDQVTDRIRG LDAGADDYLI KPYDPAELLA RLRAVERRRS
AGSSPVLHLG TLEIDLAHDR VRKDGNPVVL TQKEWALLRV MATRPERIHT RENLADALYG
FGDEADSNTL EVFISRLRRK LGKNHIQTLR GLGYRLSTSS GDDE
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